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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Plant Sci.</journal-id>
<journal-title>Frontiers in Plant Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Plant Sci.</abbrev-journal-title>
<issn pub-type="epub">1664-462X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fpls.2020.00152</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Plant Science</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>The Developmental Enhancement of a C<sub>4</sub> System With Non-Typical C<sub>4</sub> Physiological Characteristics in <italic>Salsola ferganica</italic> (Kranz Anatomy), an Annual Desert Halophyte</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Liu</surname><given-names>Yanxia</given-names>
</name>
<xref ref-type="author-notes" rid="fn003"><sup>&#x2020;</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/512527"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Maimaitijiang</surname><given-names>Tayier</given-names>
</name>
<xref ref-type="author-notes" rid="fn003"><sup>&#x2020;</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/781407"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Zhang</surname><given-names>Jinghua</given-names>
</name>
<xref ref-type="author-notes" rid="fn003"><sup>&#x2020;</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/512595"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Ma</surname><given-names>Yali</given-names>
</name>
<uri xlink:href="https://loop.frontiersin.org/people/458646"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Lan</surname><given-names>Haiyan</given-names>
</name>
<xref ref-type="author-notes" rid="fn001"><sup>*</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/911879"/>
</contrib>
</contrib-group>
<aff id="aff1"><institution>Xinjiang Key Laboratory of Biological Resources and Genetic Engineering, College of Life Science and Technology, Xinjiang University</institution>, <addr-line>Urumqi</addr-line>, <country>China</country></aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: Julian Eaton-Rye, University of Otago, New Zealand</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: Hongchang Cui, Florida State University, United States; Susanne Hoffmann-Benning, Michigan State University, United States</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: Haiyan Lan, <email xlink:href="mailto:lanhaiyan@xju.edu.cn">lanhaiyan@xju.edu.cn</email></p>
</fn>
<fn fn-type="other" id="fn002">
<p>This article was submitted to Plant Cell Biology, a section of the journal Frontiers in Plant Science</p>
</fn>
<fn fn-type="equal" id="fn003">
<p>&#x2020;These authors have contributed equally to this work</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>06</day>
<month>03</month>
<year>2020</year>
</pub-date>
<pub-date pub-type="collection">
<year>2020</year>
</pub-date>
<volume>11</volume>
<elocation-id>152</elocation-id>
<history>
<date date-type="received">
<day>30</day>
<month>07</month>
<year>2019</year>
</date>
<date date-type="accepted">
<day>31</day>
<month>01</month>
<year>2020</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2020 Liu, Maimaitijiang, Zhang, Ma and Lan</copyright-statement>
<copyright-year>2020</copyright-year>
<copyright-holder>Liu, Maimaitijiang, Zhang, Ma and Lan</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>Variations of photosynthetic structures in different tissues or cells are in coordination with changes in various aspects, e.g. physiology, biochemistry, gene expression, etc. Most C<sub>4</sub> plant species undergo developmental enhancement of the photosynthetic system, which may present different modes of changes between anatomy and physiology/biochemistry. In the current study, we investigated a Kranz-type C<sub>4</sub> species <italic>Salsola ferganica</italic> with the progressive development of photosynthetic (PS) structure, performance of PS physiology, induction of PS enzymes, and transcriptional and translational regulation of PS genes, results revealed that <italic>S. ferganica</italic> presented C<sub>3</sub> type anatomy in cotyledons but C<sub>4</sub> type in leaves (C<sub>3</sub>/L<sub>4</sub>), with the C<sub>4</sub> system separation of initial carbon fixation in the palisade mesophyll (M) cells and the following incorporation into triosephosphates and sugars in the bundle sheath (BS) cells, respectively. The BS cells continuously surrounded the vascular bundles and water storage cells in leaf anatomic structure. Compared to the single-cell C<sub>4</sub> species <italic>Suaeda aralocaspica</italic>, <italic>S. ferganica</italic> exhibited similar developmental enhancement of C<sub>4</sub> syndrome temporally and spatially in anatomic structures, enzyme activities, and gene expression, which suggests that completion of differentiation of the photosynthetic system is necessary for a C<sub>4</sub> assimilation pathway. Besides, <italic>S. ferganica</italic> also displayed some different characteristics compared to <italic>S. aralocaspica</italic> in photosynthetic physiology, e.g. a more flexible &#x3b4;<sup>13</sup>C value, much lower phosphoenolpyruvate carboxylase (PEPC) activity, and an insensitive response to stimuli, etc., which were not typical C<sub>4</sub> characteristics. We speculate that this may suggest a different status of these two species in the evolutionary process of the photosynthesis pathway. Our findings will contribute to further understanding of the diversity of photosynthesis systems in Kranz-type C<sub>4</sub> species and the <italic>Salsola</italic> genus.</p>
</abstract>
<kwd-group>
<kwd>C<sub>4</sub> photosynthetic system</kwd>
<kwd>developmental enhancement</kwd>
<kwd>Kranz-type anatomy</kwd>
<kwd><italic>Salsola ferganica</italic></kwd>
<kwd><italic>Suaeda aralocaspica</italic></kwd>
</kwd-group>
<contract-num rid="cn001">31660068, 31460043, 31260037</contract-num>
<contract-sponsor id="cn001">National Natural Science Foundation of China<named-content content-type="fundref-id">10.13039/501100001809</named-content>
</contract-sponsor>
<counts>
<fig-count count="11"/>
<table-count count="4"/>
<equation-count count="0"/>
<ref-count count="79"/>
<page-count count="21"/>
<word-count count="11911"/>
</counts>
</article-meta>
</front>
<body>
<sec id="s1" sec-type="intro">
<title>Introduction</title>
<p>Photosynthetic carbon assimilation pathways at least include C<sub>3</sub>, C<sub>4</sub>, CAM (Crassulacean acid metabolism), and/or C<sub>2</sub> (C<sub>3</sub>-C<sub>4</sub> intermediate) types (<xref ref-type="bibr" rid="B52">Raghavendra and Das, 1993</xref>; <xref ref-type="bibr" rid="B30">Khoshravesh et al., 2016</xref>), each is associated with distinct features of leaf anatomy, physiology, biochemistry, etc. (<xref ref-type="bibr" rid="B53">Sage and Stata, 2015</xref>). Compared to the C<sub>3</sub> type, C<sub>4</sub> photosynthesis is advantageous when limited carbon acquisition occurs under high temperature, drought, or saline conditions (<xref ref-type="bibr" rid="B57">Sage, 2004</xref>). According to documentation, Amaranthaceae (Chenopodiaceae has been classified into this family currently) possesses the most diverse photosynthetic types and the largest number of C<sub>4</sub> species in dicotyledonous plants (<xref ref-type="bibr" rid="B49">Pyankov et al., 2000</xref>; <xref ref-type="bibr" rid="B50">Pyankov et al., 2001</xref>; <xref ref-type="bibr" rid="B27">Kadereit et al., 2003</xref>). As one of the largest genera in the family, <italic>Salsola</italic> has the most abundant photosynthetic types recorded so far (<xref ref-type="bibr" rid="B51">Pyankov et al., 2010</xref>; <xref ref-type="bibr" rid="B74">Wen and Zhang, 2011</xref>), in which many species are widely distributed and can adapt to extreme desert conditions (<xref ref-type="bibr" rid="B72">Wei et al., 2008</xref>; <xref ref-type="bibr" rid="B41">Ma et al., 2016</xref>). The classical C<sub>4</sub> photosynthetic pathway differentiates a specialized leaf anatomy (Kranz structure), which consists of two distinct photosynthetic cell types (mesophyll [M] cells and bundle sheath [BS] cells) (<xref ref-type="bibr" rid="B22">Hatch, 1987</xref>); whereas single-cell (SC) C<sub>4</sub> plants can accomplish C<sub>4</sub> and C<sub>3</sub> cycles within the same chlorenchyma cell by biochemical compartmentation of the related enzymes and separation of dimorphic chloroplasts in distinct positions (<xref ref-type="bibr" rid="B18">Erlinghaeuser et al., 2016</xref>). So far, four SC-C<sub>4</sub> terrestrial species have been recorded, i.e. <italic>Bienertia sinuspersici</italic>, <italic>Bienertia Cycloptera</italic>, <italic>Bienertia kavirense</italic>, and <italic>Suaeda aralocaspica</italic>, all belonging to the Amaranthaceae (Chenopodiaceae before), which have different spatial distributions of organelles and photosynthetic enzymes in a single chlorenchyma cell (<xref ref-type="bibr" rid="B40">Lung et al., 2012</xref>). Usually, behaviors (distribution, activity, etc.) of photosynthetic enzymes in single cells will be correspondingly changed with the structural adjustment (<xref ref-type="bibr" rid="B65">Voznesenskaya et al., 2001a</xref>). These variations of photosynthetic anatomy and enzyme function may promote a deeper understanding of carbon assimilation pathway in plants.</p>
<p>Studies have shown that similar anatomy may express different physiological and biochemical characteristics, e.g. plants with C<sub>4</sub> structure may act with C<sub>3</sub>-like behavior (<xref ref-type="bibr" rid="B17">Edwards et al., 1990</xref>; <xref ref-type="bibr" rid="B75">Wen and Zhang, 2015</xref>): it has been suggested that these species might be in the process of evolution from a C<sub>3</sub> to C<sub>4</sub> photosynthetic pathway on both anatomical and biochemical levels (<xref ref-type="bibr" rid="B36">Ku et al., 1983</xref>). Four C<sub>3</sub>-C<sub>4</sub> intermediate species, <italic>Flaveria anomala</italic>, <italic>Flaveria liaris</italic>, <italic>Flaveria pubescens</italic>, and <italic>Flaveria ramosissima</italic> in the <italic>Flaveria</italic> genus have Kranz-like leaf anatomy, whereas the activities of C<sub>4</sub> enzyme phosphoenolpyruvate carboxylase (PEPC), pyruvate orthophosphate dikinase (PPDK), etc. and some photosynthetic physiological characteristics are similar to C<sub>3</sub> species (<xref ref-type="bibr" rid="B36">Ku et al., 1983</xref>). In the <italic>Salsola</italic> genus, <italic>Salsola arbusculiformis</italic> has the intermediate anatomic features of two-to-three layers of M cells and Kranz-like BS cells, while the photosynthetic enzyme activity, immunolocalization, and <sup>14</sup>CO<sub>2</sub> labeling of initial fixation products are presented as a C<sub>4</sub> type (<xref ref-type="bibr" rid="B66">Voznesenskaya et al., 2001b</xref>); a C<sub>4</sub> anatomic structure in <italic>Salsola laricifolia</italic>, however, appears with C<sub>3</sub> or C<sub>3</sub>-C<sub>4</sub> physiological characteristics (<xref ref-type="bibr" rid="B75">Wen and Zhang, 2015</xref>). The inconsistency between photosynthetic biochemical characteristics and anatomic structures in <italic>Salsola</italic> species cannot include all the cases (<xref ref-type="bibr" rid="B70">Voznesenskaya et al., 2013</xref>). All available evidence suggests that the evolutionary process from C<sub>3</sub> ancestors to C<sub>4</sub> plants occurred many times independently in taxonomically diverse groups (<xref ref-type="bibr" rid="B36">Ku et al., 1983</xref>; <xref ref-type="bibr" rid="B61">Soros and Dengler, 2001</xref>; <xref ref-type="bibr" rid="B70">Voznesenskaya et al., 2013</xref>), which may result in various intermediates matched or not matched in between anatomy and physiological or biochemical characteristics.</p>
<p>All forms of C<sub>4</sub> species studied so far have been observed with the gradient differentiation of the photosynthetic structure and biochemistry, which finally results in establishment of a fully functional C<sub>4</sub> syndrome (<xref ref-type="bibr" rid="B33">Koteyeva et al., 2014</xref>; <xref ref-type="bibr" rid="B34">Koteyeva et al., 2016</xref>). In the Kranz-type C<sub>4</sub> species representatives, maize and <italic>Arundinella hirta</italic> in the Poaceae, the latter has not only M and BS cells (normal Kranz cells) but also another type of Kranz cells (named as distinctive [D] cells), which are not associated with vascular bundles (VB); however, all cell types show progressive differentiation and enzyme induction pattern, i.e. PEPC or ribulose-1,5-bisphosphate carboxylase (RUBPC) accumulates in M, BS, or D cells along the base-to-tip maturation gradient in developing leaves (<xref ref-type="bibr" rid="B38">Langdale et al., 1988</xref>; <xref ref-type="bibr" rid="B71">Wakayama et al., 2003</xref>). <italic>Suaeda taxifolia</italic> and <italic>Suaeda eltonica</italic> (Chenopodiaceae), with M and BS cells distributed around the leaf periphery and surrounding VB in the central plane, respectively, both present a longitudinal gradient development of photosynthetic structure and biochemistry in young leaves. In coordination with formation of Kranz anatomy, the chloroplast dimorphism and mitochondrial differentiation are established, and the expression of PPDK, NAD-malic enzyme (NAD-ME), RUBPC, or PEPC is significantly increased in parallel (<xref ref-type="bibr" rid="B31">Koteyeva et al., 2011a</xref>). Different types of anatomy between <italic>Cleome angustifolia</italic> and <italic>Cleome gynandra</italic> (with single and multiple Kranz units, respectively) suggest the independent evolutionary origins of C<sub>4</sub> photosynthesis, but they present similar developmental enhancement of C<sub>4</sub> system (<xref ref-type="bibr" rid="B33">Koteyeva et al., 2014</xref>). In SC-C<sub>4</sub> species <italic>S. aralocaspica</italic> and <italic>B. sinuspersici</italic>, a gradual enhancement of development along a longitudinal gradient of the young leaf is accompanied by increasing activity of photosynthetic enzymes (e.g. PEPC and RUBPC) (<xref ref-type="bibr" rid="B68">Voznesenskaya et al., 2003</xref>; <xref ref-type="bibr" rid="B39">Lara et al., 2008</xref>; <xref ref-type="bibr" rid="B34">Koteyeva et al., 2016</xref>). Taken together, the progressive development of C<sub>4</sub> anatomy and related biochemistry should be an adaptive strategy for C<sub>4</sub> species formed in the long-term evolutionary process.</p>
<p>In the <italic>Salsola</italic> genus, there are a total of nine anatomic types among the C<sub>4</sub> plant species (<xref ref-type="bibr" rid="B74">Wen and Zhang, 2011</xref>), which makes this genus a good candidate for the study of photosynthetic related anatomy, physiology, and biochemistry (<xref ref-type="bibr" rid="B70">Voznesenskaya et al., 2013</xref>). <italic>Salsola ferganica</italic> is an annual herbaceous halophyte of <italic>Salsola</italic> and distributed in desert areas of high temperature, drought, and salinization (<xref ref-type="bibr" rid="B79">Zhao et al., 2002</xref>; <xref ref-type="bibr" rid="B42">Ma et al., 2018</xref>). So far, reports on photosynthetic structures in <italic>S. ferganica</italic> were limited (<xref ref-type="bibr" rid="B76">Wen et al., 2010</xref>), and the relevant physiology, biochemistry, or gene expression on photosynthesis has not been documented. Our previous work on <italic>S. ferganica</italic> revealed that the photosynthetic structure and &#x3b4;<sup>13</sup>C value significantly varied with developmental progression and environmental changes. Based on our observations and updates on the <italic>Salsola</italic> genus, and by employing SC-C<sub>4</sub> plant species <italic>S. aralocaspica</italic> as the control, in the present study, we address the following questions: (1) Does the photosynthetic anatomy in <italic>S. ferganica</italic> become optimized with plant development progression and if so how does it change? (2) How do the physiology and biochemistry processes progress in coordination with photosynthetic structure differentiation? (3) What photosynthetic enzymes and genes act in the process? By addressing these questions, our findings expand our knowledge of the phenomenon of developmental enhancement of the C<sub>4</sub> system in <italic>S. ferganica</italic> and increase our understanding of the physiology and biochemistry of carbon fixation in photosynthetic pathways.</p>
</sec>
<sec id="s2" sec-type="materials|methods">
<title>Materials and Methods</title>
<sec id="s2_1">
<title>Plant Cultivation and Treatments</title>
<p><italic>S. ferganica</italic> and <italic>S. aralocaspica</italic> seeds were sown in pots containing perlite: vermiculite (1:3, v/v) in a greenhouse. After emergence, seedlings were cultivated at 18&#x2013;37&#xb0;C (Outdoor: 15&#x2013;36&#xb0;C), 5&#x2013;30% relative humidity, 50&#x2013;300 (Outdoor: 400&#x2013;2,000) &#x3bc;mol m<sup>-2</sup> s<sup>-1</sup> light source, and a 14&#x2013;16 h light/8&#x2013;10 h dark photoperiod. Half-strength Hoagland solution (<xref ref-type="bibr" rid="B24">Hoagland and Arnon, 1950</xref>) was applied at 2-week intervals. <italic>Chenopodium glaucum</italic> (Chenopodiaceae) and <italic>Nicotiana tabacum</italic> were grown under the same cultivation system for assay of PEPC and RUBPC activity.</p>
<p>For paraffin section preparation (for cotyledon or leaf anatomic structure, starch staining, immuno-histochemical localization of photosynthetic enzyme assays), samples were collected as described in <xref ref-type="supplementary-material" rid="SM1"><bold>Supplementary Figure 1</bold></xref>. The image was taken from an indoor plant (the morphology was different from that arising under natural field conditions as shown in <xref ref-type="supplementary-material" rid="SM2"><bold>Supplementary Figure 2</bold></xref>). Three types of leaves from different parts of the plant were collected according to the following criteria: 0.5&#x2013;0.6 cm leaf on the top part, 1.3&#x2013;1.5 cm (<italic>S. ferganica</italic>) or 1.8&#x2013;1.9 cm (<italic>S. aralocaspica</italic>) on the upper part, 1.0 cm (<italic>S. ferganica</italic>) or 2.0 cm (<italic>S. aralocaspica</italic>) on the lower part, respectively; each of the different sizes of leaves were carefully divided into tip, middle, and bottom segments, which were then fixed in formalin acetic alcohol (FAA) fixation solution. For qRT-PCR or western blotting analysis of photosynthetic gene or enzyme expression, different leaf segments were immediately frozen in liquid nitrogen for RNA or protein extraction.</p>
<p>For NaCl treatment, different concentrations of NaCl solution (100, 300, 500 mmol L<sup>-1</sup>) prepared with half-strength Hoagland solution were applied to pots from seed sowing time at an interval of 5 days till the experiment was finished: each time the soil matrix was thoroughly saturated with appropriate NaCl solutions. Half strength Hoagland solution was used as the control medium. Four samples of each treatment at 7<sup>th</sup> d, 15<sup>th</sup> d, and 30<sup>th</sup> d after seedling emergence were collected, and ground on ice upon being frozen in liquid nitrogen for immediate assay or stored at &#x2212;80&#xb0;C for a short time.</p>
</sec>
<sec id="s2_2">
<title>Observation of Micro-Structure of Leaf, Starch Staining or Immuno-Histochemical Localization</title>
<p>The first completely developed leaf from the top of plant was sampled and three leaves for each species were collected, each leaf was cut into three fragments (tip, middle, bottom) (<xref ref-type="bibr" rid="B34">Koteyeva et al., 2016</xref>). FAA solution (90 ml 50% ethanol: 5 ml formaldehyde: 5 ml glacial acetic acid) was used to fix plant tissues. In order to immediately and thoroughly fix the materials, the sealed small glass bottle containing FAA solution and tissues was placed under vacuum repeatedly and gently with a syringe to evacuate the air until the tissues fell down to the bottom, the bottles were then placed at 4&#xb0;C for 24 h. Through a series of ethanol dehydration, xylene clearing, paraffin inclusion, and embedding, the paraffin blocks containing tissues were sliced into 6&#x2013;12 &#x3bc;m sections with a microtome (Leica RM2126), and were then expanded and deparaffinized. For micro-structure observation, sections were counterstained with 1% safranine and 1% fast green; for starch staining, after 1 h staining with 1% safranine, slides were immersed into 1% I<sub>2</sub>-KI stock solution (8 g KI + 1 g I<sub>2</sub> dissolve in 100 ml distilled water) for 20&#x2013;30 min, then quickly and gently washed with trichloroethane followed by rinsing in distilled water for 30 s. For immuno-histochemical localization, sections were spread on siliconized slides, and treated with 3% hydrogen peroxide methanol solution for 10 min to remove endogenous peroxidase and then rinsed with PBST (phosphate buffered saline [0.01 M, pH 7.2&#x2013;7.4] [Cat. No. P1010, Solarbio, China] containing 0.05% Tween-20) for 5 min (three times). Following microwave heating repair at 95&#xb0;C in citrate buffer for 11 min, the slides were rinsed with PBST as described above. Then slides were blocked with 1% bovine serum album (BSA) for 30&#x2013;60 min, incubated with 1:10 diluted (with 1% BSA) primary antibodies of RUBPC and PEPC, which were made by Abmart (Abmart Shanghai Co., Ltd., China). The epitopic amino acid sequences for polyclonal primary antibody of PEPC and RUBPC were CEKLSSIDAQLR (N-terminal phosphorylation site of typical plant type of PEPC) and QARNEGRDLAREGN (conserved amino acids of plant RUBPC large subunit), respectively. After incubation at 37&#xb0;C for 1 h, slides were rinsed with PBST buffer for 6 times/15 min each, then incubated with horseradish peroxidase (HRP) labeled secondary antibody (1:500 diluted with 1% BSA) at 37&#xb0;C for 1 h. The treated slides were stained with diaminobenzidine (DAB) (Sangon, Shanghai), and rinsed with PBST for 5 times/15 min each (<xref ref-type="bibr" rid="B25">Huang et al., 2015</xref>). For all above, sections were then treated in absolute ethanol for 5 min (two changes) and then in xylene for 5 min (two changes) for dehydration. After mounting, slides were sealed with neutral balsam and incubated at 37&#xb0;C for drying and finally inspected. The images were acquired by an inverted fluorescence microscope (Nikon ECLIPSE Ti-E, Japan), and photographs were taken by using Nis-Elemens software (Japan).</p>
</sec>
<sec id="s2_3">
<title>Measurement of MC: BSC or C<sub>d</sub>: C<sub>p</sub> Area Ratio and Chloroplast Size</title>
<p>Leaves from outdoor plants (4&#x2013;8 weeks old) were used for measurement. The paraffin sections were prepared before inspection under the microscope (as described above). For area of mesophyll cells (MC) and bundle sheath cells (BSC) in <italic>S.&#xa0;ferganica</italic>, or C<sub>d</sub> and C<sub>p</sub> (referring to the distal end and proximal end areas of a single chlorenchyma cell, respectively; these were obtained from the division at the apparently chloroplast-free area) in <italic>S. aralocaspica</italic>, the tip segment of mature leaf was employed, 5 leaves with 5 views of each, and 6 MCs and BSCs (<italic>S. ferganica</italic>) or chlorenchyma cell (<italic>S. aralocaspica</italic>) of each view were measured; for the chloroplast size, 3 leaves with 3 cells of each, and 5 chloroplasts from each cell were measured. Two measurements were conducted under 100&#xd7;oil immersion lens, and Image J 1.48U software (National Institutes of Health, USA) was used in calculation of cell area and chloroplast size; Microsoft Excel software was used in the data analysis.</p>
</sec>
<sec id="s2_4">
<title>Determination of <italic>&#x3b4;</italic> Value of <sup>13</sup>C Carbon Isotope</title>
<p>Leaves collected from <italic>S. ferganica</italic> and <italic>S. aralocaspica</italic> (cultivated in greenhouse or outdoors) were immediately placed at 150&#xb0;C for 30 min to deactivate enzymes, then transferred to an aerated oven at 70&#xb0;C overnight, finally the tissue was ground into an homogeneous powder and sent for &#x3b4;<sup>13</sup>C value determination (Beijing Ailemengtuo Science and Technology Co. Ltd., Beijing). &#x3b4;<sup>13</sup>C value was calculated by reference to the international standard PDB [Pee Dee Belemnite (<xref ref-type="bibr" rid="B2">Bender et al., 1973</xref>)].</p>
</sec>
<sec id="s2_5">
<title>Assay of PEPC and RUBPC Activity</title>
<p>Enzyme-catalyzed reactions were employed in determination of activity of PEPC and RUBPC. For PEPC, young fresh leaves (0.1 g) from the upper part of plant were homogenized on ice in extraction buffer (1.0 ml) containing 100 mM Tris-H<sub>2</sub>SO<sub>4</sub> (pH 8.2), 7 mM &#x3b2;-mercaptoethanol, 1 mM EDTA, and 5% glycerol. The homogenate was centrifuged at 1,800 <italic>g</italic> for 15&#x2013;20 min at 4&#xb0;C and the supernatant was immediately used. The following steps were performed according to protocols described by Cao&#x2019;s reaction mixture (1.0&#xa0;ml) consisted of 70 mM MgSO<sub>4</sub>&#xb7;7H<sub>2</sub>O (143 &#x3bc;l), 70 mM NaHCO<sub>3</sub> (143 &#x3bc;l), 14 mM phosphoenolpyruvic acid (286 &#x3bc;l), 5 mM NADH (429 &#x3bc;l) with only modification by addition of 10 U malate dehydrogenase and 20 &#x3bc;l crude enzyme to initiate reactions (<xref ref-type="bibr" rid="B6">Cao et al., 2015</xref>). For RUBPC assays, young fresh leaves (0.1 g) from the upper part of the plant were ground on ice in extraction buffer (1.5&#xa0;ml) containing 40 mM Tris-HCl (pH 7.6), 10 mM MgCl<sub>2</sub>&#xb7;6H<sub>2</sub>O, 0.25 mM EDTA, and 5 mM glutathione, followed by centrifugation as mentioned above, the supernatant was then immediately used for assay. The reaction mixture (1.0 ml) consisted of 0.2 mM NaHCO<sub>3</sub> (67 &#x3bc;l), reaction buffer (467 &#x3bc;l) (100 mM Tris-HCl [pH 7.8], 12 mM MgCl<sub>2</sub>&#xb7;6H<sub>2</sub>O, 0.4 mM EDTA), crude enzyme extract (133 &#x3bc;l), 5 mM NADH (67 &#x3bc;l), 50 mM ATP (67 &#x3bc;l), 50 mM DL-dithiothreitol (67 &#x3bc;l), distilled water (33 &#x3bc;l), 160 U&#xb7;ml<sup>-1</sup> phosphoglycerate kinase (33 &#x3bc;l), 160 U&#xb7;ml<sup>-1</sup> phosphoglyceraldehyde dehydrogenase (33 &#x3bc;l), and 25 mM RuBP (33 &#x3bc;l) (<xref ref-type="bibr" rid="B6">Cao et al., 2015</xref>). The absorbance of both reaction mixtures was recorded on a UV-3010 spectrophotometer (Shimadzu, Japan) for 3 min at 340 nm. Enzyme activity of PEPC and RUBPC was defined as 0.01 optical density value decrease per minute equaling 1 U (<xref ref-type="bibr" rid="B44">NC-IUB, 1979</xref>). Total protein content was determined by measuring the absorbance at 595 nm. For diurnal changes of enzyme activity, the light intensity, temperature, and relative humidity indoor or outdoor were measured simultaneously at 2 h intervals (<xref ref-type="table" rid="T1"><bold>Table 1</bold></xref>).</p>
<table-wrap id="T1" position="float">
<label>Table 1</label>
<caption>
<p>Light intensity, temperature, and humidity at different time points.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" rowspan="2" align="left">Time points</th>
<th valign="top" colspan="8" align="center">Indoor time</th>
</tr>
<tr>
<th valign="top" align="left">08:00</th>
<th valign="top" align="center">10:00</th>
<th valign="top" align="center">12:00</th>
<th valign="top" align="center">14:00</th>
<th valign="top" align="center">16:00</th>
<th valign="top" align="center">18:00</th>
<th valign="top" align="center">20:00</th>
<th valign="top" align="center">22:00</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Light Int. (&#x3bc;mol&#xb7;m<sup>-2</sup>&#xb7;s<sup>-1</sup>)</td>
<td valign="top" align="center">64.2</td>
<td valign="top" align="center">160.4</td>
<td valign="top" align="center">171.2</td>
<td valign="top" align="center">268.5</td>
<td valign="top" align="center">198.2</td>
<td valign="top" align="center">153.4</td>
<td valign="top" align="center">83.09</td>
<td valign="top" align="center">3.5</td>
</tr>
<tr>
<td valign="top" align="left">Temp. (&#xb0;C)</td>
<td valign="top" align="center">19.4</td>
<td valign="top" align="center">25.9</td>
<td valign="top" align="center">30.3</td>
<td valign="top" align="center">36.1</td>
<td valign="top" align="center">35.9</td>
<td valign="top" align="center">34.7</td>
<td valign="top" align="center">34.6</td>
<td valign="top" align="center">30.1</td>
</tr>
<tr>
<td valign="top" align="left">Hum. (%)</td>
<td valign="top" align="center">30</td>
<td valign="top" align="center">23</td>
<td valign="top" align="center">18</td>
<td valign="top" align="center">10<break/></td>
<td valign="top" align="center">10</td>
<td valign="top" align="center">10</td>
<td valign="top" align="center">10</td>
<td valign="top" align="center">10</td>
</tr>
<tr>
<td valign="top" rowspan="2" align="left"><bold>Time points</bold></td>
<td valign="top" colspan="8" align="center"><bold>Outdoor time</bold></td>
</tr>
<tr>
<td valign="top" align="left"><bold>08:00</bold></td>
<td valign="top" align="center"><bold>10:00</bold></td>
<td valign="top" align="center"><bold>12:00</bold></td>
<td valign="top" align="center"><bold>14:00</bold></td>
<td valign="top" align="center"><bold>16:00</bold></td>
<td valign="top" align="center"><bold>18:00</bold></td>
<td valign="top" align="center"><bold>20:00</bold></td>
<td valign="top" align="center"><bold>22:00</bold></td>
</tr>
<tr>
<td valign="top" align="left">Light Int. (&#x3bc;mol&#xb7;m<sup>-2</sup>&#xb7;s<sup>-1</sup>)</td>
<td valign="top" align="center">467.9</td>
<td valign="top" align="center">1143.5</td>
<td valign="top" align="center">1803.6</td>
<td valign="top" align="center">1916.9</td>
<td valign="top" align="center">1596.8</td>
<td valign="top" align="center">826.9</td>
<td valign="top" align="center">539.2</td>
<td valign="top" align="center">10.16</td>
</tr>
<tr>
<td valign="top" align="left">Temp. (&#xb0;C)</td>
<td valign="top" align="center">19.3</td>
<td valign="top" align="center">22.2</td>
<td valign="top" align="center">27.3</td>
<td valign="top" align="center">35.8</td>
<td valign="top" align="center">31.7</td>
<td valign="top" align="center">29.9</td>
<td valign="top" align="center">28.6</td>
<td valign="top" align="center">25.3</td>
</tr>
<tr>
<td valign="top" align="left">Hum. (%)</td>
<td valign="top" align="center">30</td>
<td valign="top" align="center">22</td>
<td valign="top" align="center">10</td>
<td valign="top" align="center">10</td>
<td valign="top" align="center">10</td>
<td valign="top" align="center">10</td>
<td valign="top" align="center">10</td>
<td valign="top" align="center">10</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<p>Int., intensity; Hum., humidity; Temp., temperature.</p>
</table-wrap-foot>
</table-wrap>
</sec>
<sec id="s2_6">
<title>Quantitative RT-PCR (qPCR)</title>
<p>Total RNA was isolated from <italic>S. ferganica</italic> or <italic>S. aralocaspica</italic> seedlings using a Plant RNA Kit (R6827-02, Omega, US). Reverse transcription was performed with 1 &#xb5;g of total RNA in 20 &#xb5;l by using M-MLV (TaKaRa, Dalian, China) according to the manufacturer&#x2019;s instruction. qPCR primers are shown in <xref ref-type="table" rid="T2"><bold>Table 2</bold></xref>. For primer design, the coding regions of <italic>PEPC</italic>1, <italic>PEPC</italic>2, <italic>PPDK</italic>, <italic>RBCL</italic> (large subunit of RUBPC) from different species reported in Chenopodiaceae were acquired, and the degenerate primers were designed to get short DNA sequences of each gene from <italic>S. ferganica</italic> or <italic>S. aralocaspica</italic>, respectively; then the accurate qPCR primers were designed based on the acquired short sequences of each gene. For <italic>PEPC</italic>1 and <italic>PEPC</italic>2 primers, it was necessary to first find out the most conserved region of <italic>PEPC</italic>1 or <italic>PEPC</italic>2 among different species reported in Chenopodiaceae, then to select the most different sequences between <italic>PEPC</italic>1 and <italic>PEPC</italic>2 from these conserved regions, which could only amplify one of these two genes in <italic>S. ferganica</italic> or <italic>S. aralocaspica</italic>. <italic>&#x3b2;-ACTIN</italic> from <italic>S. ferganica</italic> or <italic>&#x3b2;-TUBULIN</italic> from <italic>S. aralocaspica</italic> was used for an internal reference gene. The above amplification was performed at the following conditions: 95&#xb0;C 2 min followed by 40 cycles of 95&#xb0;C 5 s, 60&#xb0;C 30 s. qPCR was performed with SuperReal PreMix Plus (SYBR Green) Kit (Cat. FP205-02; Tiangen, China) and ABI 7500 Real time PCR system (Applied Biosystem, USA). Relative quantification of specific mRNA level was calculated using the cycle threshold (Ct) 2<sup>&#x2212;&#x394;&#x394;Ct</sup> method (<xref ref-type="bibr" rid="B60">Shi and Chiang, 2005</xref>), where &#x394;&#x394;C<sub>T</sub> = &#x394;C<sub>T</sub> <sub>target</sub> <sub>sample</sub> - &#x394;C<sub>T</sub> <sub>control</sub> <sub>sample</sub>, &#x394;C<sub>T</sub> <sub>target</sub> <sub>sample</sub>= C<sub>T</sub> <sub>test</sub> <sub>gene</sub> - C<sub>T</sub> <sub>reference</sub> <sub>gene</sub>. Three samples (biological replicates) of each treatment were duplicated (technical replicates) in each qPCR experiment. The final value of relative quantification was described as fold change of gene expression in target sample compared to the control of the bottom segment of leaf in each test gene.</p>
<table-wrap id="T2" position="float">
<label>Table 2</label>
<caption>
<p>Primer sequences used in the present study.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" rowspan="2" align="left">Plant species</th>
<th valign="top" rowspan="2" align="left">Gene</th>
<th valign="top" colspan="2" align="center">Primer sequence 5&#x2019;-3&#x2019;</th>
</tr>
<tr>
<th valign="top" align="left">Forward</th>
<th valign="top" align="left">Reverse</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" rowspan="5" align="left"><italic>S. ferganica</italic></td>
<td valign="top" align="left"><italic>PEPC</italic>1</td>
<td valign="top" align="left">GGCATACACTCTGAAGCGGATAC</td>
<td valign="top" align="left">GCATTCCAGCAGCAATACCCTT</td>
</tr>
<tr>
<td valign="top" align="left"><italic>PEPC</italic>2</td>
<td valign="top" align="left">TGTCCATTTGGCGAGGGG</td>
<td valign="top" align="left">CCTTTGAGATGTGGGGCCT</td>
</tr>
<tr>
<td valign="top" align="left"><italic>PPDK</italic></td>
<td valign="top" align="left">CATCTTGACCAACTTCTTCATCCAC</td>
<td valign="top" align="left">ACTCTTTCCTTGTGCTTGCCAG</td>
</tr>
<tr>
<td valign="top" align="left"><italic>RBCL</italic></td>
<td valign="top" align="left">GGCAGCATTCCGAGTAAGTCC</td>
<td valign="top" align="left">TCAAAAAGGTCTAAGGGGTACGCTA</td>
</tr>
<tr>
<td valign="top" align="left"><italic>&#x3b2;-ACTIN</italic></td>
<td valign="top" align="left">TCTACAATGAGCTTCGTGTGGC</td>
<td valign="top" align="left">CACCATCACCAGAATCCAGCAC</td>
</tr>
<tr>
<td valign="top" rowspan="5" align="left"><italic>S. aralocaspica</italic></td>
<td valign="top" align="left"><italic>PEPC</italic>1</td>
<td valign="top" align="left">GCATCCACCAAGCTCTCCTAAG</td>
<td valign="top" align="left">CCATACTCCAACTCAGGCG</td>
</tr>
<tr>
<td valign="top" align="left"><italic>PEPC</italic>2</td>
<td valign="top" align="left">GAACTCTCCAGCGTTTCACTG</td>
<td valign="top" align="left">CAATGCAGTTTCTGGTGTGG</td>
</tr>
<tr>
<td valign="top" align="left"><italic>PPDK</italic></td>
<td valign="top" align="left">CTGTCCCAGGAGTCAAACAC</td>
<td valign="top" align="left">CACTGAACTAACTGCTTCCGA</td>
</tr>
<tr>
<td valign="top" align="left"><italic>RBCL</italic></td>
<td valign="top" align="left">ACGGTCGAGCAGTTTATGAATGTC</td>
<td valign="top" align="left">GTCTTCACATGTACCCGCAGTAGC</td>
</tr>
<tr>
<td valign="top" align="left"><italic>&#x3b2;-TUBULIN</italic></td>
<td valign="top" align="left">CCTTATTCCATTCCCCAGGCTTC</td>
<td valign="top" align="left">CATCTGCTCATCAACCTCCTTTGTGC</td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
<sec id="s2_7">
<title>Western Blotting Analysis of Photosynthetic Enzymes</title>
<p>Leaf samples (approximately 0.2 g) of different developmental stages, i.e. young leaf (YL, 0.2&#x2013;0.3 cm), intermediate leaf (IL, 0.5&#x2013;0.6 cm), mature leaf (1.2&#x2013;1.5 cm), from different positions (plant upper leaf [PUL], plant middle leaf [PML], plant lower leaf [PLL]), and leaf segments (approximately 0.1 g; intermediate leaf divided into three parts towards the bottom, middle, and tip), were used for extraction of the soluble protein according to the method described by <xref ref-type="bibr" rid="B32">Koteyeva et al. (2011b)</xref>. The supernatant (protein solution) was mixed with loading buffer [250 mM Tris-HCl, pH 6.8, 10% (w/v) SDS, 50% (v/v) glycerol, 5% (v/v) &#x3b2; -mercaptoethanol, and 0.5% (w/v) bromphenol blue] in 4:1 (v:v) and boiled for 10 min, then used for SDS-PAGE after centrifuged at 10,000 <italic>g</italic> for 10 min at 4&#xb0;C. Protein concentration was determined with a Bradford protein assay kit (Solarbio, Beijing). Protein samples (10 &#x3bc;g of each) were resolved by 12% (w/v) SDS-PAGE, and transferred to a polyvinylidene fluoride membrane for immunoblotting analysis of the photosynthetic enzymes. All the primary antibodies used in the present study were raised against the predicted optimal epitopic antigens of the conserved amino acid sequences of PEPC, PPDK, NAD-ME, RBCL from <italic>S. aralocaspica</italic>, the amino acid residues of the epitopic antigens of these antibodies and the working dilution were as follows: anti-<italic>Sa</italic>PEPC (EKLSSIDAQLR) IgG (1:500), anti-<italic>Sa</italic>NAD-ME (NGRTGHVNQGNNMY) IgG (1:200), anti-<italic>Sa</italic>PPDK (KLATEKGRAAKPSL) IgG (1:200), and anti-<italic>Sa</italic>RBCL (QARNEGRDLAREGN [large subunit of RUBPC]) IgG (1:500), the epitopic antigens of all these enzymes from <italic>S. aralocaspica</italic> could be used in western blotting detection of <italic>S. ferganica</italic> based on sequence analysis. The secondary antibody&#x2014;goat anti-rabbit IgG (conjugated horseradish peroxidase) (1:2000)&#x2014;was used for detection. Bound antibodies were visualized by enhanced chemiluminescent (Biosharp, Beijing), and images were acquired by luminescent image analyzer (FUJIFILM LAS-4000, Japan). The bands were quantified by Image J 1.41 (Wayne Rasband National Institutes of Health, USA) and calculated as relative intensity (RI, %). For RI of each enzyme in YL, IL, PUL, PML, and PLL, the 'PUL' was used while for bottom, middle, and tip of leaf, the &#x2018;Tip&#x2019; was used as reference in calculations.</p>
</sec>
<sec id="s2_8">
<title>Statistical Analysis</title>
<p>Data were analyzed and graphs were prepared by Graphad Prism 5.0 for Windows (GraphPad Software, San Diego, CA). One-way or two-way ANOVA was used to compare more than two variables. Significant differences were analyzed by a multiple comparison Tukey test at 0.05, 0.01, or 0.001 significance level.</p>
</sec>
</sec>
<sec id="s3" sec-type="results">
<title>Results</title>
<sec id="s3_1">
<title>Plant Development and Morphological Characteristics of <italic>S. ferganica</italic></title>
<p><italic>S. ferganica</italic> is an annual halophyte distributed in harsh natural habitats. Its seed with winged perianth can germinate on the soil surface in the presence of high salinity. Early seedlings of <italic>S.&#xa0;ferganica</italic> presented with two smooth flat lanceolate cotyledons (<xref ref-type="supplementary-material" rid="SM2"><bold>Supplementary Figure 2A</bold></xref>), while the true leaf was succulent and appeared as a long clavate shape, more interestingly, which was covered with white, thick, long, and soft trichomes (<xref ref-type="supplementary-material" rid="SM2"><bold>Supplementary Figure 2B</bold></xref>), and these remained on the plant from an early seedling to an early adult stage (<xref ref-type="supplementary-material" rid="SM2"><bold>Supplementary Figure 2C</bold></xref>). With further plant development, the trichomes became thinner and shorter on leaves until almost invisible (<xref ref-type="supplementary-material" rid="SM2"><bold>Supplementary Figures 2D, E</bold></xref>). We found that the dynamics of trichome growth and decline on plants were corresponding to the development rhythms of <italic>S. ferganica</italic>, i.e. trichomes were thick and long at an early stage while shorter and thinner at a later stage, which suggests that trichomes must be an adaptive structure to protect seedling survival.</p>
</sec>
<sec id="s3_2">
<title>Cotyledon and Leaf Anatomic Structures of <italic>S. ferganica</italic> and <italic>S. aralocaspica</italic></title>
<p>Besides the different appearance between the cotyledons and the true leaf form in <italic>S. ferganica</italic>, the anatomic structure was also different (<xref ref-type="fig" rid="f1"><bold>Figures 1A&#x2013;F</bold></xref>). In the case of the cotyledon, M cells had no significant differentiation in their micro-structure (<xref ref-type="fig" rid="f1"><bold>Figures 1A&#x2013;C</bold></xref>); however, M cells of the true leaf were specialized and organized into a layer of elongated, palisade-like cells around a ring of BS cells (Kranz structure) inside (<xref ref-type="fig" rid="f1"><bold>Figures 1D&#x2013;F</bold></xref>); in contrast, the appearance and anatomic structures of the cotyledon (<xref ref-type="fig" rid="f1"><bold>Figures 1I&#x2013;K</bold></xref>) and leaf (<xref ref-type="fig" rid="f1"><bold>Figures 1L&#x2013;N</bold></xref>) of S<italic>. aralocaspica</italic> were similar, in which the chlorenchyma cells were organized as a layer of elongated, palisade-like cells. Analysis of immuno-histochemical localization showed that, in <italic>S. ferganica</italic>, PEPC was distributed throughout the M cells, while RUBPC presented in BS cells (<xref ref-type="fig" rid="f1"><bold>Figures 1G, H</bold></xref>); in <italic>S. aralocaspica</italic>, PEPC was observed in all of chlorenchyma cells while RUBPC was only found at the proximal end (<xref ref-type="fig" rid="f10"><bold>Figures 1O, P</bold></xref>).</p>
<fig id="f1" position="float">
<label>Figure 1</label>
<caption>
<p>Anatomic structures of cotyledon and leaf and immunohistochemical localization of PEPC and RUBPC of leaf in <italic>S. ferganica</italic> and <italic>S. aralocaspica</italic>. <bold>(A&#x2013;H)</bold> <italic>S. ferganica</italic>; <bold>(I&#x2013;P)</bold> <italic>S. aralocaspica</italic>; <bold>(A, D, I, L)</bold> Images of whole leaf cross section; <bold>(B, E, J, M)</bold> Enlarged images of part leaf cross section; <bold>(A, B, I, J)</bold> Cotyledon; <bold>(D, E, L, M)</bold> Leaf; <bold>(C, F, K, N)</bold> The schematic drawing corresponding to B, E, J, M; <bold>(G, O)</bold> PEPC; <bold>(H, P)</bold> RUBPC. BS, bundle sheath; C, chlorenchyma; M, mesophyll; VB, vascular bundle; WS, water storage. The images of anatomic structure and immunohistochemical localization of PEPC and RUBPC were all acquired from mature leaves of outdoor plant. Scale bar in A, D, I, L is 200 &#x3bc;m; B, E, G, H, J, M, O, P is 50 &#x3bc;m.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-11-00152-g001.tif"/>
</fig>
</sec>
<sec id="s3_3">
<title>Starch Staining in Developing Cotyledon and Leaf in <italic>S. ferganica</italic> and <italic>S. aralocaspica</italic></title>
<p>Starch staining in cotyledon at 0 d, 4<sup>th</sup> d, and 8<sup>th</sup> d after germination was visualized in both plant species by paraffin sections under the microscope (no true leaf emerged at this moment in either <italic>S. ferganica</italic> or <italic>S. aralocaspica</italic>) (<xref ref-type="fig" rid="f2"><bold>Figure 2</bold></xref>). Starch granules in the cotyledon of <italic>S. ferganica</italic> (C<sub>3</sub> structure) at 0 d were mainly accumulated in the interior M cells (<xref ref-type="fig" rid="f2"><bold>Figures 2A, E</bold></xref>), but were distributed in most of the M cells on the 4<sup>th</sup> d as the cotyledon developed and the starch staining was stronger in cells near the lower surface than the upper surface (<xref ref-type="fig" rid="f2"><bold>Figures 2B, F</bold></xref>). At the 8<sup>th</sup> d, the starch distribution pattern in cotyledons was similar to that of the 4<sup>th</sup>d (<xref ref-type="fig" rid="f2"><bold>Figures 2C, G</bold></xref>). In the mature true leaf of <italic>S. ferganica</italic> (C<sub>4</sub> structure), starch granules were mainly distributed in the interior bottom of BS cells, and some in the periplasm of water storage (WS) cells (<xref ref-type="fig" rid="f2"><bold>Figures 2D, H</bold></xref>).</p>
<fig id="f2" position="float">
<label>Figure 2</label>
<caption>
<p>General anatomy (upper panel) and starch localization (lower panel) in developing cotyledon and true leaf of <italic>S. ferganica</italic> and <italic>S. aralocaspica</italic>. <bold>(A, E, I, M)</bold> Cotyledon, 0 d; <bold>(B, F, J, N)</bold> Cotyledon, 4<sup>th</sup> d; <bold>(C, G, K, O)</bold> Cotyledon, 8<sup>th</sup> d; <bold>(D, H, L, P)</bold> Mature leaf. BS, bundle sheath; C, chlorenchyma; E, epidermis; H, hypodermis; M, mesophyll; VB, vascular bundle; WS, water storage. Scale bar is 50 &#x3bc;m.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-11-00152-g002.tif"/>
</fig>
<p>In <italic>S. aralocaspica</italic>, starch granules in the cotyledon (C<sub>4</sub> structure) at 0 d were mainly distributed in outer the layer of hypodermal cells and inner WS cells (<xref ref-type="fig" rid="f2"><bold>Figures 2I, M</bold></xref>). With cell structure differentiation, the single layer of chlorenchyma cells was elongated in the radial direction and formed a palisade-like cell layer with cytoplasm polarized towards the proximal and distal ends. At the 4<sup>th</sup> d, starch granules were distributed in the peripheral cytosol of chlorenchyma, hypodermal and WS cells (<xref ref-type="fig" rid="f2"><bold>Figures 2J, N</bold></xref>). At the 8<sup>th</sup> d, palisade-like chlorenchyma cells became longer, and starch granules were accumulated at the proximal end of chlorenchyma cells (<xref ref-type="fig" rid="f2"><bold>Figures 2K, O</bold></xref>). In the mature true leaf, starch granules were mainly distributed at the proximal end of apparently elongated chlorenchyma cells (<xref ref-type="fig" rid="f2"><bold>Figures 2L, P</bold></xref>).</p>
</sec>
<sec id="s3_4">
<title>Characteristics of MC: BSC and C<sub>d</sub>: C<sub>p</sub> Ratio and &#x3b4;<sup>13</sup>C Value in <italic>S. ferganica</italic> <break/>and <italic>S. aralocaspica</italic></title>
<p>Results of cell area ratio showed that it was 1.42 (MC : BSC) for <italic>S.&#xa0;ferganica</italic>, and 1.67 for <italic>S. aralocaspica</italic> (C<sub>d</sub> : C<sub>p</sub> of single chlorenchyma cell). At the same time, two different sizes of chloroplasts were observed in both species, i.e. in the inner BS cell of <italic>S. ferganica</italic> or proximal end of chlorenchyma cells of <italic>S. aralocaspica</italic> oval chloroplasts were observed, but in peripheral M cells or the distal end, long thin oval chloroplasts were present (<xref ref-type="fig" rid="f3"><bold>Figure 3</bold></xref>; <xref ref-type="table" rid="T3"><bold>Table 3</bold></xref>). Analysis of the &#x3b4;<sup>13</sup>C value indicated that it changed significantly under different conditions in <italic>S. ferganica</italic>, i.e. &#x2212;16.15&#x2030; in outdoor adult plant in summer; &#x2212;20.41&#x2030; or &#x2212;21.73&#x2030; in greenhouse seedlings in winter or greenhouse adult plant in summer. Compared to SC-C<sub>4</sub> <italic>S. aralocaspica</italic> with values of &#x2212;14.87&#x2030; in greenhouse seedlings in winter, and the C<sub>3</sub> species <italic>C.&#xa0;album</italic> (&#x2212;34.15&#x2030;) or <italic>N. tabacum</italic> (&#x2212;33.10&#x2030;) in greenhouse adult plant in summer, the above results suggest that the &#x3b4;<sup>13</sup>C value of <italic>S. ferganica</italic> is flexible and can adjust with the development progression of the plant and when environmental conditions change (<xref ref-type="table" rid="T4"><bold>Table 4</bold></xref>).</p>
<fig id="f3" position="float">
<label>Figure 3</label>
<caption>
<p>The shapes and sizes of dimorphic chloroplasts in <italic>S. ferganica</italic> and <italic>S. aralocaspica</italic>. <bold>(A)</bold> <italic>S. ferganica</italic>; <bold>(B)</bold> <italic>S. aralocaspica</italic>. Samples were collected from indoor plant. BS, bundle sheath; Ch1, chloroplast in MC (<italic>S. ferganica</italic>) or C<sub>d</sub> (<italic>S. aralocaspica</italic>); Ch2, chloroplast in BSC (<italic>S. ferganica</italic>) or C<sub>p</sub> (<italic>S. aralocaspica</italic>); C<sub>d</sub>, distal end of chlorenchyma cell; C<sub>p</sub>, proximal end of chlorenchyma cell; M, mesophyll. Scale bar is 10 &#x3bc;m.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-11-00152-g003.tif"/>
</fig>
<table-wrap id="T3" position="float">
<label>Table 3</label>
<caption>
<p>Properties of anatomic structures of mesophyll cells (MC), bundle sheath cells (BSC), chlorenchyma cells (CC), and dimorphic chloroplasts in <italic>S. ferganica</italic> and <italic>S. aralocaspica</italic>.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" rowspan="2" align="left">Species</th>
<th valign="top" rowspan="2" align="center">Cell area ratio<sup>&#x3b4;</sup></th>
<th valign="top" colspan="3" align="center">Dimorphic chloroplast</th>
</tr>
<tr>
<th valign="top" align="left">Shape</th>
<th valign="top" align="center">Size (&#x3bc;m)</th>
<th valign="top" align="center">Location</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left"><italic>S. ferganica</italic></td>
<td valign="top" align="center">1.42 &#xb1; 0.29</td>
<td valign="top" align="left">Oval<break/>Long thinoval</td>
<td valign="top" align="center">5.32 &#xb1; 0.87&#xd7;3.43 &#xb1; 1.09<break/>5.41 &#xb1; 1.33&#xd7;1.06 &#xb1; 0.24</td>
<td valign="top" align="left">Inner BSC<break/>Peripheral M</td>
</tr>
<tr>
<td valign="top" align="left"><italic>S. aralocaspica</italic></td>
<td valign="top" align="center">1.67 &#xb1; 0.26</td>
<td valign="top" align="left">Oval<break/>Long thin oval</td>
<td valign="top" align="center">3.29 &#xb1; 0.66&#xd7;2.63 &#xb1; 0.34<break/>4.44 &#xb1; 0.84&#xd7;1.21 &#xb1; 0.24</td>
<td valign="top" align="center">Proximal end of CC<break/>Distal end of CC</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<p><sup>&#x3b4;</sup>, for S. ferganica is MC : BSC, for S. aralocaspica is C<sub>d</sub> : C<sub>p</sub> (ratio between the distal end area and proximal end area of the chlorenchyma cell). All data were collected from indoor plants. Values are means &#xb1; SE of 15 replicates.</p>
</table-wrap-foot>
</table-wrap>
<table-wrap id="T4" position="float">
<label>Table 4</label>
<caption>
<p>&#x3b4;<sup>13</sup>C value of <italic>S. ferganica</italic> and other plant species.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="left">Plant species</th>
<th valign="top" align="center">Growth condition</th>
<th valign="top" align="center">Measurement date</th>
<th valign="top" align="center">Developmental stage</th>
<th valign="top" align="center">&#x3b4;<sup>13</sup>C (&#x2030;)</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left"><italic>S. aralocaspica</italic></td>
<td valign="top" align="left">Greenhouse</td>
<td valign="top" align="left">Dec, 2015</td>
<td valign="top" align="left">Early seedling (1 W)</td>
<td valign="top" align="center">&#x2212;14.87 &#xb1; 0.366</td>
</tr>
<tr>
<td valign="top" align="left"><italic>S. ferganica</italic></td>
<td valign="top" align="left">Greenhouse</td>
<td valign="top" align="left">Dec, 2015</td>
<td valign="top" align="left">Early seedling (1 W)</td>
<td valign="top" align="center">&#x2212;20.41 &#xb1; 0.3129</td>
</tr>
<tr>
<td valign="top" align="left"><italic>S. ferganica</italic></td>
<td valign="top" align="left">Greenhouse</td>
<td valign="top" align="left">May, 2016</td>
<td valign="top" align="left">Early adult plant (2 M)</td>
<td valign="top" align="center">&#x2212;21.73 &#xb1; 0.2012</td>
</tr>
<tr>
<td valign="top" align="left"><italic>S. ferganica</italic></td>
<td valign="top" align="left">Outdoor</td>
<td valign="top" align="left">May, 2016</td>
<td valign="top" align="left">Early adult plant (2 M)</td>
<td valign="top" align="center">&#x2212;16.15 &#xb1; 0.3463</td>
</tr>
<tr>
<td valign="top" align="left"><italic>C. album</italic></td>
<td valign="top" align="left">Greenhouse</td>
<td valign="top" align="left">May, 2016</td>
<td valign="top" align="left">Early adult plant (2 M)</td>
<td valign="top" align="center">&#x2212;34.15 &#xb1; 0.6043</td>
</tr>
<tr>
<td valign="top" align="left"><italic>N. tabacum</italic></td>
<td valign="top" align="left">Greenhouse</td>
<td valign="top" align="left">May, 2016</td>
<td valign="top" align="left">Early adult plant (2 M)</td>
<td valign="top" align="center">&#x2212;33.10 &#xb1; 0.3284</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<p>W, week; M, month. &#x3b4;<sup>13</sup>C, carbon isotope value. &#x3b4;<sup>13</sup>C value of C<sub>4</sub> species is &#x2212;10&#x2030;&#x2013;&#x2212;15&#x2030;; C<sub>3</sub> species is &#x2212;21&#x2030;&#x2013;&#x2212;30&#x2030; (<xref ref-type="bibr" rid="B54">Sage et al., 1999</xref>). Values are means &#xb1; SE of three replicates.</p>
</table-wrap-foot>
</table-wrap>
</sec>
<sec id="s3_5">
<title>Characteristics of PEPC and RUBPC Activity in <italic>S. ferganica</italic> and <italic>S. aralocaspica</italic></title>
<sec id="s3_5_1">
<title>Diurnal Changes</title>
<p>To understand PEPC and RUBPC activity in response to the alteration of light intensity during a whole day, we measured the enzyme activity from 8:00 am (08:00) in the morning until 10:00 pm (22:00) in the evening at 2 h intervals (<xref ref-type="fig" rid="f4"><bold>Figures 4A&#x2013;F</bold></xref>). The overall PEPC activity (PA) of <italic>S. ferganica</italic> was much lower than that of <italic>S. aralocaspica</italic> (<xref ref-type="fig" rid="f4"><bold>Figures 4A, B</bold></xref>), especially that of outdoor plants; while RUBPC activity (RA) exhibited the opposite trend between the two species (<xref ref-type="fig" rid="f4"><bold>Figures 4D, E</bold></xref>), with higher RA in indoor plants compared to activity in outdoor plants. Between the two enzymes, RA was higher than that of PA in <italic>S. ferganica</italic>, especially from indoor plants (<xref ref-type="fig" rid="f4"><bold>Figures 4A, D</bold></xref>); while in <italic>S.&#xa0;aralocaspica</italic>, the two enzymes showed the opposite trend (<xref ref-type="fig" rid="f4"><bold>Figures 4B, E</bold></xref>). The highest PA was observed in outdoor grown <italic>S. aralocaspica</italic> (<xref ref-type="fig" rid="f4"><bold>Figures 4A, B</bold></xref>), while the highest RA appeared in <italic>S. ferganica</italic> that had been grown indoors (<xref ref-type="fig" rid="f4"><bold>Figures 4D, E</bold></xref>). Our results indicate a tendency of PA in <italic>S. ferganica</italic> and <italic>S. aralocaspica</italic> to present as a &#x201c;double peak&#x201d; pattern; for indoor plants, two higher PA values presented at 12:00 pm (noon) and 6:00 pm (18:00) in the early evening (<xref ref-type="fig" rid="f4"><bold>Figures 4A, B</bold></xref>); for outdoor plants, these were at 10:00 am or 12:00 pm in the morning and at noon, and at 8:00 pm (20:00) in the evening. As a C<sub>3</sub> plant control, <italic>C. glaucum</italic> presented a different pattern on PA and RA in response to diurnal changes, which were at a lower activity level and appeared to be insensitive to light intensity (<xref ref-type="fig" rid="f4"><bold>Figures 4C, F</bold></xref>). Our results suggest that the differences in activity of two photosynthetic enzymes exist between <italic>S.&#xa0;ferganica</italic> and <italic>S.&#xa0;aralocaspica</italic>, in which the former appeared as non-typical C<sub>4</sub> plant characteristics compared to that of <italic>S. aralocaspica</italic>.</p>
<fig id="f4" position="float">
<label>Figure 4</label>
<caption>
<p>Diurnal changes of PEPC and RUBPC activity in <italic>S. ferganica</italic>, <italic>S. aralocaspica</italic> and <italic>C. glaucum</italic>. <bold>(A, D)</bold> <italic>S. ferganica</italic>; <bold>(B, E)</bold> <italic>S. aralocaspica</italic>; <bold>(C, F)</bold> <italic>C. glaucum</italic>; <bold>(A&#x2013;C)</bold> PEPC activity; <bold>(D&#x2013;F)</bold> RUBPC activity. Indoor, in greenhouse; Outdoor, out of greenhouse. PA, PEPC activity; RA, RUBPC activity.</p>
</caption>
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</fig>
</sec>
<sec id="s3_5_2">
<title>Developmental Changes and Salt Responses</title>
<p>PA and RA under NaCl treatment or different growth periods showed that, for <italic>S. ferganica</italic>, PA was increased at 15 d and 30 d compared to that of 7 d plants, while there was no large change between 15 d and 30 d plants (<xref ref-type="fig" rid="f5"><bold>Figure 5A</bold></xref>). Moreover, at early developmental time (7 d or 15 d), PA was increased with rising NaCl concentration; whereas RA was increased significantly at 30 d compared to that of 7 d or 15 d; however, there was no large change of PA or RA between 7 d and 15 d plants, or among different NaCl concentrations (<xref ref-type="fig" rid="f5"><bold>Figure 5B</bold></xref>). For <italic>S. aralocaspica</italic>, PA was increased with seedling development at lower or medium NaCl concentrations between 7 d and 15 d (or 30 d) after emergence (<xref ref-type="fig" rid="f5"><bold>Figure 5D</bold></xref>); RA was increased at 15 d while reduced at 30 d but there was no significant change among different NaCl concentrations (<xref ref-type="fig" rid="f5"><bold>Figure 5E</bold></xref>). For the C<sub>3</sub> species control plants: <italic>C. glaucum</italic> (halophyte) or <italic>N. tabacum</italic> (glycophyte) presented a much lower PA level than that of <italic>S.&#xa0;ferganica</italic> or <italic>S. aralocaspica</italic>, there was almost no large change among different developmental periods or NaCl concentrations (<xref ref-type="fig" rid="f5"><bold>Figures 5G, J</bold></xref>); RA of <italic>C. glaucum</italic> was at a similar level and pattern to RA in <italic>S. aralocaspica</italic>, and declined with increasing NaCl concentration (<xref ref-type="fig" rid="f5"><bold>Figure 5H</bold></xref>); while RA of <italic>N. tabacum</italic> was the highest among the four species, and was increased with seedling development, although reduced with increasing NaCl concentration (<xref ref-type="fig" rid="f5"><bold>Figure 5K</bold></xref>). The above changes of PA and RA resulted in an increase of PEPC : RUBPC ratio (P:R)&#xa0;from 7 d to 15 d but this decreased at 30 d plants in <italic>S. ferganica</italic>: the highest value observed was about 10 (500 mM NaCl at 15 d) and the lowest was around 3 (control at 7 d and 500 mM NaCl at 30 d) (<xref ref-type="fig" rid="f5"><bold>Figure 5C</bold></xref>). For <italic>S. aralocaspica</italic>, the P:R ratio was increased from 7 d to 30 d except for the higher NaCl concentrations at 15 d or 30 d (<xref ref-type="fig" rid="f5"><bold>Figure 5F</bold></xref>), the highest value was about 40 (control at 30 d) and the lowest was around 5 (500 mM NaCl at 15 d); for <italic>C.&#xa0;glaucum</italic>, P:R was increased with increasing NaCl concentration and most of the values were lower than 1.0 (<xref ref-type="fig" rid="f5"><bold>Figure 5I</bold></xref>); for <italic>N.&#xa0;tabacum</italic>, P:R was reduced with seedling development and in general lower than 0.5 (<xref ref-type="fig" rid="f5"><bold>Figure 5L</bold></xref>). Results of PA and P:R suggest that the photosynthetic physiology of <italic>S. ferganica</italic> presents a difference compared to that of <italic>S. aralocaspica</italic>, which exhibited as non-typical C<sub>4</sub> characteristics.</p>
<fig id="f5" position="float">
<label>Figure 5</label>
<caption>
<p>Changes of PEPC and RUBPC activity and its ratio in <italic>S. ferganica</italic>, <italic>S. aralocaspica</italic>, <italic>C. glaucum</italic>, and <italic>N. tabacum</italic> under NaCl treatment at different developmental stages. <bold>(A&#x2013;C)</bold> <italic>S. ferganica</italic>; <bold>(D&#x2013;F)</bold> <italic>S. aralocaspica</italic>; <bold>(G&#x2013;I)</bold> <italic>C. glaucum</italic>; <bold>(J&#x2013;L)</bold> <italic>N</italic>. <italic>tabacum</italic>; <bold>(A, D, G, J)</bold> PEPC activity; <bold>(B, E, H, K)</bold> RUBPC activity; <bold>(C, F, I, L)</bold> Ratio of PEPC: RUBPC. PA, PEPC activity; RA, RUBPC activity; P: R, PEPC activity: RUBPC activity; 7, 15, 30: Days of seedling after emergence. Different lowercase letters above columns indicate significant differences (<italic>P</italic> &lt; 0.05 or 0.01) among different NaCl concentrations at the same developmental stage; different uppercase letters above columns indicate significant difference (<italic>P</italic> &lt; 0.05 or 0.01) among different developmental stages at the same NaCl concentration. Values are means &#xb1; SE of four replicates.</p>
</caption>
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</fig>
</sec>
</sec>
<sec id="s3_6">
<title>Developmental Changes of Amount and Localization of PEPC and RUBPC in Leaf of <italic>S. ferganica</italic> and <italic>S. aralocaspica</italic></title>
<p>In both <italic>S. ferganica</italic> and <italic>S. aralocaspica</italic>, structural differentiation of BS and M cells (in <italic>S. ferganica</italic>) or chlorenchyma cells (in <italic>S. aralocaspica</italic>) of young leaves (0.5&#x2013;0.6 cm long) was inspected using transverse (TS) and longitudinal (LS) sections under the microscope (<xref ref-type="fig" rid="f6"><bold>Figures 6</bold></xref> and <xref ref-type="fig" rid="f7"><bold>7</bold></xref>). <italic>In situ</italic> immuno-histochemical localization (ISIHL) was analyzed based on results of paraffin sections.</p>
<fig id="f6" position="float">
<label>Figure 6</label>
<caption>
<p>Anatomic structure of leaf and <italic>in situ</italic> immuno-histochemical localization (ISIHL) of RUBPC and PEPC of <italic>S. ferganica</italic> with transverse and longitudinal sections of young leaves (0.5&#x2013;0.6 cm), showing a progressive development with gradual structure differentiation. <bold>(A&#x2013;G)</bold> Anatomic structure of young leaf; <bold>(H&#x2013;U)</bold> ISIHL results; <bold>(A&#x2013;C)</bold> Transverse sections from the bottom to tip of leaf; <bold>(D&#x2013;F)</bold> Detailed views corresponding to A&#x2013;C; <bold>(G)</bold> Longitudinal sections of leaf; <bold>(H&#x2013;J)</bold> ISIHL of RUBPC (RBCL) at the bottom, middle, and tip of leaf; <bold>(K&#x2013;M)</bold> Detailed views corresponding to H&#x2013;J; <bold>(N)</bold> ISIHL of RUBPC (RBCL) of longitudinal direction of leaf; <bold>(O&#x2013;Q)</bold> ISIHL of PEPC at bottom, middle, and tip of leaf; <bold>(R&#x2013;T)</bold> Detailed views corresponding to O&#x2013;Q; <bold>(U)</bold> ISIHL of PEPC of longitudinal direction of leaf. For LS structure of leaf, the tip is on the right. BS, bundle sheath; E, epidermis; H, hypodermis; M, mesophyll; WS, water storage. Scale bar in A&#x2013;C, G&#x2013;J, N&#x2013;Q, U is 100&#xa0;&#xb5;m; in D&#x2013;F, K-M, R&#x2013;T is 50 &#xb5;m.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-11-00152-g006.tif"/>
</fig>
<fig id="f7" position="float">
<label>Figure 7</label>
<caption>
<p>Anatomic structure of leaf and <italic>in situ</italic> immune-histochemical localization (ISIHL) of RUBPC and PEPC in <italic>S. aralocaspica</italic> with transverse and longitudinal sections of young leaves (0.5&#x2013;0.6 cm), showing a progressive development with gradual structure differentiation. <bold>(A&#x2013;G)</bold> Anatomic structure of young leaf; <bold>(H&#x2013;U)</bold> ISIHL results; <bold>(A&#x2013;C)</bold> Transverse sections from the bottom to tip of leaf; <bold>(D&#x2013;F)</bold> Detailed views corresponding to A&#x2013;C; <bold>(G)</bold> Longitudinal sections of leaf; <bold>(H&#x2013;J)</bold> ISIHL of RUBPC (RBCL) at the bottom, middle, and tip of leaf; <bold>(K&#x2013;M)</bold> Detailed views corresponding to H&#x2013;J; <bold>(N)</bold> ISIHL of RUBPC (RBCL) of longitudinal direction of leaf; <bold>(O&#x2013;Q)</bold> ISIHL of PEPC at the bottom, middle, and tip of leaf; <bold>(R&#x2013;T)</bold> Detailed views corresponding to O&#x2013;Q; <bold>(U)</bold> ISIHL of PEPC of longitudinal direction of leaf. For LS structure of leaf, the tip is on the right. C, chlorenchyma; E, epidermis; H, hypodermis; WS, water storage. Scale bar in A&#x2013;C, G&#x2013;J, N&#x2013;Q, U is 100 &#xb5;m; in K&#x2013;M, R&#x2013;T is 50 &#xb5;m; D&#x2013;F is 25 &#xb5;m.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fpls-11-00152-g007.tif"/>
</fig>
<p>In <italic>S. ferganica</italic>, TS results showed that cells at the bottom of the leaf were less developed, BS cells presented as a discontinuous structure and were compact oblate in appearance, M cells were tightly arranged around the BS with thick cytosol and striking nucleus; while at the tip of the leaf, a continuous layer of BS cells was observed (<xref ref-type="fig" rid="f6"><bold>Figures 6A&#x2013;F</bold></xref>). In addition, the cell volume became larger: M cells were enlarged and elongated, their cytosol became thinner, and chloroplasts became distributed along the radial cell periplasm. Compared to cells at the bottom, an interspace was introduced among M cells and between M cells and epidermal cells. LS results visualized a clear differentiation in BS and M cells from the bottom to the tip of the leaf, which presented a gradual developmental variation in structural specialization accompanying cell expansion (<xref ref-type="fig" rid="f6"><bold>Figure 6G</bold></xref>). Structure observations showed a higher differentiation in the tip cells while there was less among the bottom cells of the leaf. ISIHL analysis revealed that RUBPC was mainly distributed in BS cells and PEPC was widely distributed in the M cells in <italic>S. ferganica</italic> (<xref ref-type="fig" rid="f6"><bold>Figures 6H&#x2013;U</bold></xref>). With photosynthetic tissue differentiated from the bottom to the tip of the leaf, the amount of RUBPC and PEPC protein was increased. Based on the analyses of TS and LS anatomic structure and enzyme localization we found that the expression of two enzymes was enhanced from the bottom to the tip of the leaf in <italic>S. ferganica</italic>.</p>
<p>In <italic>S. aralocaspica</italic>, TS and LS results showed that chlorenchyma cells near the leaf base were smaller and shorter, while cells at the tip were apparently developmentally advanced and similar to mature chlorenchyma cells, in which the chloroplasts were distributed to the proximal end or distal part, an apparent &#x201c;chloroplast-free region&#x201d; was also present in the middle part of chlorenchyma cells (<xref ref-type="fig" rid="f7"><bold>Figures 7A&#x2013;G</bold></xref>). ISIHL analysis showed that the amount of RUBPC and PEPC protein increased with the leaf maturation, and from the bottom to the tip cells of the leaf (<xref ref-type="fig" rid="f7"><bold>Figures 7H&#x2013;U</bold></xref>). The distribution of RUBPC was apparently concentrated to the proximal end in the tip cells compared to an irregular distribution in the bottom cells of young leaves (<xref ref-type="fig" rid="f7"><bold>Figures 7H&#x2013;N</bold></xref>); PEPC was enhanced around the whole periplasm of chlorenchyma cells (<xref ref-type="fig" rid="f7"><bold>Figures 7O&#x2013;U</bold></xref>).</p>
<p>Apart from the longitudinal gradient development of young leave, photosynthetic structural and biochemical enhancement was also observed with plant development progression. In <italic>S. ferganica</italic>, clear differentiation in BS and M cells was present from early seedling (0.2 cm leaf) to mature seedling (1.0 cm leaf) (<xref ref-type="fig" rid="f8"><bold>Figures 8A&#x2013;J</bold></xref>), both types of cells were expanded, the BS cells were arranged from discontinuous to continuous, and M cells were elongated. These changes presented a similar pattern with the differentiation in the same leaf from the bottom to the tip (<xref ref-type="fig" rid="f6"><bold>Figure 6</bold></xref>). ISIHL analysis showed that RUBPC was mainly distributed in BS cells while PEPC was in the whole periplasm of M cells (<xref ref-type="fig" rid="f8"><bold>Figures 8K&#x2013;T</bold></xref>). With the maturation of the leaf, the expression of RUBPC and PEPC was increased.</p>
<fig id="f8" position="float">
<label>Figure 8</label>
<caption>
<p>Anatomic structure of leaf and <italic>in situ</italic> immuno-histochemical localization (ISIHL) of RUBPC and PEPC of <italic>S. ferganica</italic> with transverse sections in the middle part of leaves at different developmental stages, showing a developmental gradient of structure differentiation. <bold>(A&#x2013;J)</bold> Anatomic structure; <bold>(K&#x2013;T)</bold> ISIHL results; <bold>(A&#x2013;E)</bold> Middle part of transverse sections of leaf at different developmental stages (0.2 cm, 0.5 cm, 1.0 cm of leaf); <bold>(F&#x2013;J)</bold> Detailed views of bundle sheath and mesophyll cells corresponding to images in A&#x2013;E; <bold>(K&#x2013;O)</bold> ISIHL of RUBPC (RBCL) corresponding to images in A&#x2013;E; <bold>(P&#x2013;T)</bold> ISIHL of PEPC corresponding to images in A&#x2013;E. BS, bundle sheath; E, epidermis; H, hypodermis; M, mesophyll; VB, vascular bundle; WS, water storage. Scale bar in A&#x2013;E is 25 &#xb5;m; in F&#x2013;T is 100 &#xb5;m.</p>
</caption>
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</fig>
<p>Besides the above findings, we also found that photosynthetic structures in sepals also presented a differentiation gradient similar to that observed for C<sub>4</sub> type Kranz-anatomy (<xref ref-type="fig" rid="f9"><bold>Figures 9A&#x2013;I</bold></xref>), although the flower would produce an embryo with C<sub>3</sub>-type cotyledons. With flower development, both BS cells and M cells in sepals were expanded and extended, chloroplasts were differentiated and re-located around cells (<xref ref-type="fig" rid="f9"><bold>Figures 9G&#x2013;I</bold></xref>).</p>
<fig id="f9" position="float">
<label>Figure 9</label>
<caption>
<p>Anatomic structure of sepal in <italic>S. ferganica</italic> with transverse sections in the middle part of the flower. <bold>(A&#x2013;C)</bold> Developing flowers, showing sepals on both sides; <bold>(D&#x2013;F)</bold> Transverse sections of developing flowers; (D<sub>1</sub>&#x2013;F<sub>1</sub>) Sepal section insets in the upper right position of D&#x2013;F; <bold>(G&#x2013;I)</bold> Detailed views of anatomic structure of sepal. Stage 1, Stage 2, Stage 3: different developmental times of flower. BS, bundle sheath; E, epidermis; H, hypodermis; M, mesophyll; VB, vascular bundle; WS, water storage. The images were acquired from the middle part of the flowers of indoor plant. Scale bar in A, (D<sub>1</sub>&#x2013;F<sub>1</sub>) is 100 &#xb5;m; in B, C is 500 &#xb5;m; in D&#x2013;F is 200 &#xb5;m; in G-I is 50 &#xb5;m.</p>
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<sec id="s3_7">
<title>Transcriptional Expression Profiles of Photosynthetic Genes Along Longitudinal Leaf Direction in <italic>S. ferganica</italic> and <break/><italic>S. aralocaspica</italic></title>
<p>To investigate expression patterns of photosynthesis-related genes in leaf development in <italic>S. ferganica</italic> and <italic>S. aralocaspica</italic>, qPCR analyses of <italic>PEPC</italic>1, <italic>PEPC</italic>2, <italic>PPDK</italic>, and <italic>RBCL</italic> (large subunit gene of <italic>RUBPC</italic>) in leaves located in different positions of the plant or along the longitudinal direction of the leaf were conducted. Results showed that, for whole plants, the highest expression level was found in the top part (<xref ref-type="fig" rid="f10"><bold>Figures 10A, B</bold></xref>), the next was that of the upper part (<xref ref-type="fig" rid="f10"><bold>Figures 10C, D</bold></xref>), the lowest was in the lower part of leaves (<xref ref-type="fig" rid="f10"><bold>Figures 10E, F</bold></xref>); for along the longitudinal direction of a leaf, four genes were remarkably up-regulated from the bottom to the tip, especially in young leaves (0.5&#x2013;0.6 cm) (<xref ref-type="fig" rid="f10"><bold>Figures 10A, B</bold></xref>). We also distinguished a transcriptional expression profile between <italic>PEPC</italic>1 and <italic>PEPC</italic>2, which we had also identified in our previous work. These two genes presented a similar expression pattern, in which <italic>PEPC</italic>1 was more active than <italic>PEPC</italic>2 in different parts of the plant or at different longitudinal positions of the leaf.</p>
<fig id="f10" position="float">
<label>Figure 10</label>
<caption>
<p>Transcriptional expression patterns of key photosynthetic genes in leaf of different positions of plant or along longitudinal direction in <italic>S. ferganica</italic> and <italic>S. aralocaspica</italic>. <bold>(A, C, E)</bold> <italic>S. ferganica</italic>; <bold>(B, D, F)</bold> <italic>S. aralocaspica</italic>; <bold>(A, B)</bold> 0.5&#x2013;0.6 cm young leaf in top of plant; <bold>(C, D)</bold> Upper part leaf of plant (1.3&#x2013;1.5 cm leaf in B; 1.8&#x2013;1.9 cm in E); <bold>(E, F)</bold> Lower part leaf of plant (1 cm leaf in C; 2 cm in F). Bottom, Middle, Tip: Different segments along longitudinal leaf gradient. All samples were collected from indoor plants. Relative expression level is represented as the sample transcripts subtract the reference transcripts. Different lowercase letters above columns indicate signi&#xfb01;cant differences (<italic>P</italic> &lt; 0.05 or 0.01) of the same gene between positions in one leaf. Values are means &#xb1; SE of three biological and two technical replicates (total of six replicates).</p>
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<sec id="s3_8">
<title>Translational Expression Patterns of Photosynthetic Enzymes Along Longitudinal Leaf Direction in <italic>S. ferganica</italic></title>
<p>Translational accumulation of the representative C<sub>4</sub> enzymes [RBCL (large subunit of RUBPC), NAD-ME, PPDK, PEPC] was analyzed by western blotting during leaf development in <italic>S. ferganica</italic> (<xref ref-type="fig" rid="f11"><bold>Figure 11</bold></xref>). All four proteins increased gradually as development progressed from the bottom to the tip of a single leaf, and with the highest level found in PUL or PML in mature leaves (<xref ref-type="fig" rid="f11"><bold>Figures 11A&#x2013;C</bold></xref>). Among these, RBCL appeared to be the most abundant, this would be the expected given level of RBCL typically found in leaves (<xref ref-type="bibr" rid="B31">Koteyeva et al., 2011a</xref>; <xref ref-type="bibr" rid="B33">Koteyeva et al., 2014</xref>; <xref ref-type="bibr" rid="B34">Koteyeva et al., 2016</xref>), which increased along the gradient from the lower (PLL) to the middle (PML) or the upper (PUL) leaves of the plant. PEPC, NAD-ME, and PPDK were also remarkably accumulated as leaf development progressed and along the longitudinal direction of a single leaf. The bottom segment of young leaves presented with considerably lower levels of these proteins, except for RBCL. In total, the accumulation of the soluble protein of each enzyme showed initially a lower level in young leaves or the lower leaves of plants or at the bottom of a single leaf, and at higher levels in mature leaves or the upper leaves of plants or the tip of a single leaf.</p>
<fig id="f11" position="float">
<label>Figure 11</label>
<caption>
<p>Translational expression patterns of key photosynthetic enzymes in leaf of different positions of plant or along longitudinal direction in <italic>S. ferganica</italic>. <bold>(A)</bold> Western blotting showing the detection of four proteins; <bold>(B, C)</bold> Quantitative expression of western blotting data by ImageJ. YL, young leaf (0.2&#x2013;0.3 cm); IL, intermediate leaf (0.5&#x2013;0.6 cm); PUL, PML, PLL: the upper, middle, lower layer of the plant; Bottom, Middle, Tip: Different segments, along longitudinal leaf gradient. Relative intensity (RI) is represented as the sample intensity divides the reference intensity. For RI of each enzyme in YL, IL, PUL, PML, and PLL, the &#x2018;PUL&#x2019; was used while for bottom, middle, and tip of leaf, the 'Tip' was used as reference in calculation. All samples were collected from indoor plants. Total soluble proteins were extracted from different ages of leaves or different parts of single leaf. Protein loading amount in each lane was 10 &#x3bc;g. Preparation and dilution of first and secondary antibodies were described in Materials and Methods.</p>
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<sec id="s4" sec-type="discussion">
<title>Discussion</title>
<p><italic>Salsola</italic> is a large genus in Amaranthaceae, in which most species belong to halophytes or xerophytes and are distributed in extremely harsh environments (<xref ref-type="bibr" rid="B1">Akhani et al., 1997</xref>). A variety of structural and physiological adaptation mechanisms have been formed in these species in long-term evolutionary processes, among which the diversity of photosynthetic assimilation pathways is one of the typical characteristics in response to stresses (<xref ref-type="bibr" rid="B51">Pyankov et al., 2010</xref>). <italic>S. ferganica</italic> is one of the halophytes in <italic>Salsola</italic>, which possesses an enhanced ability for adaptation to adverse environments (<xref ref-type="bibr" rid="B26">Huang, 2005</xref>). So far, documentation suggests that <italic>S. ferganica</italic> has C<sub>4</sub> Kranz-type structure and its &#x3b4;<sup>13</sup>C value is in the range of C<sub>4</sub> plants (<xref ref-type="bibr" rid="B74">Wen and Zhang, 2011</xref>). However, we found that large changes existed in leaf anatomic structures at different developmental stages and in some photosynthetic physiological behaviors in this species. Based on the previous findings, in the present study, we tried to explore the possible mechanisms of enhancement in photosynthetic structures and corresponding enzyme activities and gene expression at transcriptional and translational levels with plant development, as well as the behaviors of photosynthetic physiology in response to varying conditions in <italic>S. ferganica</italic>. Our results revealed that cotyledons had typical C<sub>3</sub> structures in <italic>S. ferganica</italic>; while in leaves the photosynthetic structures, chloroplast dimorphism, PEPC:RUBPC ratio, starch staining, PEPC and RUBPC localization all presented as C<sub>4</sub>-Kranz Salsoloid type; moreover, with leaf or plant development, the anatomic structures and corresponding biochemistry of C<sub>4</sub> syndrome were enhanced, i.e. in coordination with the changes of photosynthetic structures, the enzyme activity and gene expression (in transcriptional and translational levels) were increased from the lower to upper part of a plant and from the bottom to the tip of single young leaves. Besides, we also found that PEPC and RUBPC behaviors in <italic>S. ferganica</italic> were different from the typical C<sub>4</sub> species <italic>S. aralocaspica</italic>. Whether our results indicate <italic>S.&#xa0;ferganica</italic> as being in a unique status during an evolutionary process for a photosynthetic pathway or not remains unknown; however, our findings should contribute to better understanding of diversity of C<sub>4</sub> photosynthetic pathways in developmental and physiological aspects.</p>
<p>The prominent characteristics in determination of photosynthetic types are anatomic structures, which are usually associated with biochemical features (<xref ref-type="bibr" rid="B36">Ku et al., 1983</xref>). It has been documented that at least four major types of anatomic structures of C<sub>4</sub> assimilation tissues exist in Chenopodiaceae, i.e. Atriplicoid, Kochioid, Salsoloid, and Suaedoid (<xref ref-type="bibr" rid="B20">Freitag and Stichler, 2000</xref>). In the present study, we visualized the significant difference in photosynthetic structure between cotyledon (C<sub>3</sub> type) and true leaf (C<sub>4</sub> type) in <italic>S. ferganica</italic>, the latter presented as continuous layers of BS and M cells surrounding WS cells and vascular tissues in well-developed leaf, which belongs to Salsoloid C<sub>4</sub> type based on reported classification (<xref ref-type="bibr" rid="B20">Freitag and Stichler, 2000</xref>). In <italic>Salsola</italic>, most species have Salsoloid anatomy with typical Kranz BS cells and C<sub>4</sub> assimilation pathway, e.g. <italic>Salsola arbuscula</italic>, <italic>Salsola chivensis</italic>, etc. (<xref ref-type="bibr" rid="B20">Freitag and Stichler, 2000</xref>; <xref ref-type="bibr" rid="B66">Voznesenskaya et al., 2001b</xref>). It has been proposed that Salsoloid anatomy evolved from Sympegmoid type (<xref ref-type="bibr" rid="B1">Akhani et al., 1997</xref>), the latter presents two-to-three layers of M cells, instead of Kranz cells, a discontinuous layer of BS cells is arranged adjacent to the peripheral bundles, e.g. <italic>Salsola webbii</italic> (C<sub>3</sub>), <italic>S. arbusculiformis</italic> (C<sub>3</sub>-C<sub>4</sub>) in <italic>Salsola</italic>, and C<sub>3</sub> species in genus <italic>Sympegma</italic> (<xref ref-type="bibr" rid="B66">Voznesenskaya et al., 2001b</xref>). Besides anatomic structures, the ratio between MC and BSC area is also important for classification of C<sub>4</sub> photosynthetic type (<xref ref-type="bibr" rid="B4">Bongard-Pierce et al., 1996</xref>). In <italic>Salsola</italic>, MC : BSC ratio in different assimilation types probably ranges around 9&#x2013;15 (C<sub>3</sub>), 5&#x2013;10 (C<sub>3</sub>-C<sub>4</sub>), or 2&#x2013;5 (C<sub>4</sub>) (<xref ref-type="bibr" rid="B70">Voznesenskaya et al., 2013</xref>). In the present study, <italic>S. ferganica</italic> showed a ratio of 1.42, which fell into C<sub>4</sub> category. C<sub>4</sub> plants with Salsoloid-type Kranz anatomy, e.g. <italic>Caroxylon orientale</italic> and <italic>Xylosalsola richteri</italic>, present ratios of 4.5 and 1.9, respectively (<xref ref-type="bibr" rid="B70">Voznesenskaya et al., 2013</xref>). Generally, C<sub>4</sub> structure is coupled with dimorphic chloroplast partitioning. Chloroplasts in BS cells are usually different in size, structure, function, etc., from those in M cells. In the classical C<sub>4</sub> plant <italic>Zea mays</italic>, chloroplasts in BS cells are deficient in grana compared to M cells (<xref ref-type="bibr" rid="B48">Prakitchai et al., 2016</xref>); whereas in different Kranz-type species of Chenopodiaceae, MC chloroplasts have a reduced grana size and granal index (the length of all appressed thylakoid membranes as a percentage to total length of all thylakoid membranes in chloroplasts) compared to BSC (<xref ref-type="bibr" rid="B21">Gamalei and Voznesenskaya, 1986</xref>; <xref ref-type="bibr" rid="B63">Ueno, 2005</xref>). In SC-C<sub>4</sub> species <italic>B. sinuspersici</italic>, dimorphic chloroplasts are biochemically located in the peripheral cytoplasm (PC, for C<sub>4</sub> cycle) or central compartment (CC, for C<sub>3</sub> cycle) around the nucleus: chloroplasts in PC are bigger than that of CC ones (<xref ref-type="bibr" rid="B58">Sascha et al., 2011</xref>). In the closely related SC-C<sub>4</sub> species <italic>B. cycloptera</italic>, the granal index of CC chloroplasts is much higher than that in PC chloroplasts, which may suggest reduced Photosystem II activity in PC chloroplasts (<xref ref-type="bibr" rid="B67">Voznesenskaya et al., 2002</xref>). In the present study, we found that, in <italic>S. ferganica</italic>, larger, oval chloroplasts were distributed in BS cells, while smaller, long thin oval chloroplasts were located in M cells; in the SC-C<sub>4</sub> plant <italic>S. aralocaspica</italic>, dimorphic chloroplasts were distributed in opposite ends of elongated chlorenchyma cells, larger ones were in the proximal ends and smaller ones in the distal ends in our experiment. However, the details of internal structure of dimorphic chloroplasts in the above two species need further experiments to clarify the extent of specialization between the types. Starch is presumably used as carbon and energy sources in leaf development. Previous studies showed that starch could be accumulated in all cell types of immature maize (classical C<sub>4</sub> species) leaf tissue, but upon maturation, accumulation stops in mesophyll cells (<xref ref-type="bibr" rid="B73">Weise et al., 2011</xref>). In the present study, in the C<sub>3</sub> type of cotyledon in <italic>S. ferganica</italic>, starch granules were randomly distributed in the mesophyll cells, while in mature C<sub>4</sub> leaves starch was mainly distributed at the bottom of the BS cells; in <italic>S. aralocaspica</italic>, starch granules were mainly distributed in the periplasm of WS and hypodermal cells in incipient leaves, while in mature leaves, starch became accumulated at the proximal ends of chlorenchyma cells. Among different C<sub>4</sub> species in Chenopodiaceae, only Rubisco-containing chloroplasts tend to accumulate starch (<xref ref-type="bibr" rid="B64">Voznesenskaya et al., 1999</xref>; <xref ref-type="bibr" rid="B68">Voznesenskaya et al., 2003</xref>; <xref ref-type="bibr" rid="B69">Voznesenskaya et al., 2005</xref>), which suggests that the presence of starch is closely associated to re-location of photosynthetic enzymes (<xref ref-type="bibr" rid="B39">Lara et al., 2008</xref>). Based on above data, we further analyzed and confirmed that RUBPC and PEPC of <italic>S. ferganica</italic> were localized in BS cells and M cells, respectively, while those of <italic>S. aralocaspica</italic> were distributed at the proximal end (RUBPC) and the whole chlorenchyma cell (PEPC), which was consistent with the previous report (<xref ref-type="bibr" rid="B70">Voznesenskaya et al., 2013</xref>). Taken together, the characteristics in anatomy, ratio of MC: BSC, dimorphic chloroplast differentiation, starch staining, and localization of photosynthetic enzymes suggest that <italic>S. ferganica</italic> belongs to a Salsoloid C<sub>4</sub> photosynthetic type.</p>
<p>On the basis of anatomy, physiological behaviors, e.g. activities of photosynthetic enzymes, are also important in determination of carbon assimilation status for C<sub>4</sub> species (<xref ref-type="bibr" rid="B66">Voznesenskaya et al., 2001b</xref>). In general, the activity of PEPC is about 50 times higher in C<sub>4</sub> plants, and it is about 3 times higher in C<sub>3</sub>-C<sub>4</sub> intermediate plants, than that of a typical C<sub>3</sub> type (<xref ref-type="bibr" rid="B66">Voznesenskaya et al., 2001b</xref>). In the present study, PEPC activity (PA) in <italic>S. ferganica</italic> was lower than that of <italic>S. aralocaspica</italic>, especially in outdoor plants. In maize, PA in leaves presents the highest value at noon while 6 times or 3 times lower in the morning or in the afternoon (<xref ref-type="bibr" rid="B47">Peng et al., 1998</xref>). Other reports on maize indicate that under optimal conditions PA is higher and no diurnal change is observed; whereas under suboptimal conditions it is reduced by over 90% and presents a &#x201c;unimodal&#x201d; trend in response to light intensity variation (<xref ref-type="bibr" rid="B28">Kalt-Torres et al., 1987</xref>). In the present study, a similar expression pattern of PA diurnal variation was found in these two species exhibiting a &#x201c;bimodal&#x201d; curve, the lowest value was observed at 14:00 (2:00 pm) in the afternoon; however, the fluctuation of the PA values in <italic>S. ferganica</italic> was much smaller compared to that of <italic>S. aralocaspica</italic>. We also found that PA of <italic>C. glaucum</italic> and <italic>N. tabacum</italic> (C<sub>3</sub> species) were insensitive to light intensity in the present study. It has been reported that in C<sub>3</sub> plants PA has no significant change over a whole day; however, strong light and high temperature at noon enhance PA in C<sub>4</sub> species like maize (<xref ref-type="bibr" rid="B47">Peng et al., 1998</xref>). Light regulation of PA has also been reported in other C<sub>4</sub> species. Compared to maize, <italic>Salsola soda</italic> displayed a more substantial effect on PA in response to light diurnal fluctuation (<xref ref-type="bibr" rid="B29">Karabourniotis et al., 1985</xref>). Our results on PA for the two C<sub>4</sub> desert plant species seemed to present a &#x201c;midday depression of photosynthesis,&#x201d; which may be in response to the strong light intensity and high temperature in the afternoon (<xref ref-type="table" rid="T1"><bold>Table 1</bold></xref>). Other photosynthetic enzymes also present different trends between C<sub>3</sub> and C<sub>4</sub> plants, the amount of RUBPC in C<sub>3</sub> is 3&#x2013;6 times higher than in C<sub>4</sub> species (<xref ref-type="bibr" rid="B35">Ku et al., 1979</xref>). In rice, the increase of RUBPC activity manifests as a &#x201c;bimodal&#x201d; pattern, in which the midday depression is in between two increases at 10:00 (maximum) and after 14:00 (slight rise) for the stomatal closing under high temperature (<xref ref-type="bibr" rid="B77">Weng et al., 1999</xref>). In the present study, RA in <italic>N. tabacum</italic> (C<sub>3</sub>) and <italic>S. ferganica</italic> (C<sub>4</sub>) was significantly higher than that of <italic>S. aralocaspica</italic>, especially that of indoor plants. High temperature can significantly decrease RA (<xref ref-type="bibr" rid="B43">Markus et al., 2006</xref>). It may be the effect of acquisition of oxygenase activity of RUBPC under rising temperature (<xref ref-type="bibr" rid="B37">Laing et al., 1974</xref>). Our results suggest that in <italic>S. ferganica</italic> PEPC and RUBPC behave as non-typical C<sub>4</sub> species compared to that of SC-C<sub>4</sub> species of <italic>S. aralocaspica</italic>.</p>
<p>In the present study, PA and the ratio of PEPC : RUBPC (P:R) in <italic>S. ferganica</italic> were lower (3&#x2013;5 times lower in activity; 2&#x2013;5 times lower in ratio) than that of <italic>S. aralocaspica</italic>, while they were remarkable higher than that of <italic>C. glaucum</italic> and <italic>N. tabacum</italic> (C<sub>3</sub>). The P:R ratio of C<sub>4</sub> plants is usually larger while C<sub>3</sub> species is less than 1, and C<sub>3</sub>-C<sub>4</sub> intermediate in <italic>Salsola</italic> is generally less than 1 but higher than C<sub>3</sub> species (<xref ref-type="bibr" rid="B11">Crespo et al., 1979</xref>). Our data showed that the P:R ratio in <italic>S. ferganica</italic> and <italic>S. aralocaspica</italic> was higher than 1, while that of the latter was much higher than the former. In addition, the performance of key photosynthetic enzymes between these two C<sub>4</sub> species was apparently different. It is known that PA increase accompanying RA decrease with stress enhancement is a typical response in C<sub>4</sub> species (<xref ref-type="bibr" rid="B19">Fontaine et al., 2003</xref>; <xref ref-type="bibr" rid="B16">Dizengremel et al., 2009</xref>). The increased PA can potentially improve carbon metabolism during a period of reduced stomatal conductance (<xref ref-type="bibr" rid="B12">Cushman and Borland, 2002</xref>; <xref ref-type="bibr" rid="B7">Carmosilva et al., 2008</xref>). Our results suggest that PA and RA in <italic>S. ferganica</italic> does not match with the typical C<sub>4</sub> performance. Apart from enzyme activity, in the present study, another photosynthetic physiology index -&#x3b4;<sup>13</sup>C in <italic>S. ferganica</italic> was also apparently affected by environmental variations, the value of outdoor (&#x2212;16.15&#x2030;) or greenhouse (&#x2212;21.73&#x2030;) plants presented much greater difference (<italic>C. album</italic> [C<sub>3</sub>]: &#x2212;34.15&#x2030;, <italic>N. tabacum</italic> [C<sub>3</sub>]: &#x2212;33.10&#x2030; in greenhouse in our test), which was much higher than the previous reported value of &#x2212;12.754&#x2030; in <italic>S. ferganica</italic> (<xref ref-type="bibr" rid="B74">Wen and Zhang, 2011</xref>). The &#x3b4;<sup>13</sup>C value is vulnerable to external environmental conditions such as water moisture, temperature, drought, etc. (<xref ref-type="bibr" rid="B8">Chen et al., 2002</xref>; <xref ref-type="bibr" rid="B46">Pan et al., 2016</xref>). Usually a difference of 4&#x2013;7&#x2030; is observed between indoor grown and outdoor grown plants (<xref ref-type="bibr" rid="B70">Voznesenskaya et al., 2013</xref>), which might explain our difference (5.58&#x2030;) between outdoor and indoor for <italic>S. ferganica</italic> plants, however, the value of the typical C<sub>4</sub> plant <italic>S. aralocaspica</italic> was &#x2212;14.87&#x2030; in greenhouse which was much smaller than that of <italic>S. ferganica</italic> in greenhouse (&#x2212;21.73&#x2030;) or outdoor (&#x2212;16.15&#x2030;). Taken together, our results suggest that the key photosynthetic physiology in <italic>S. ferganica</italic> behaves with characteristics of a non-typical C<sub>4</sub> species compared to SC-C<sub>4</sub> type <italic>S. aralocaspica</italic>. Whether these differences arise because <italic>S. ferganica</italic> is at different evolutionary position in its development of its C<sub>4</sub> photosynthetic pathway compared with <italic>S. aralocaspica</italic> remains to be a question for further exploration.</p>
<p>To complete C<sub>4</sub> photosynthesis at high efficiency, a progressive development is usually coupled with leaf differentiation relating to photosynthetic structure and biochemistry in many C<sub>4</sub> plant species (<xref ref-type="bibr" rid="B34">Koteyeva et al., 2016</xref>). Studies on a typical Kranz-anatomy species, <italic>S. taxifolia</italic>, revealed that a basipetally developmental mode of C<sub>4</sub> structure and biochemistry is visualized by analysis of longitudinal leaf sections (<xref ref-type="bibr" rid="B31">Koteyeva et al., 2011a</xref>). In the present study, the anatomic structure and ISIHL analyses indicate that Kranz-anatomy C<sub>4</sub> species <italic>S. ferganica</italic> presented a progressive development mode for both photosynthetic structure and biochemistry along the longitudinal gradient of young leaf, moreover, such gradient changes also applied to different developmental stages in leaves of lower, middle and upper parts of plants in coordination with the differentiation of BS and M cells, dimorphic chloroplasts, and enhancement of the photosynthetic enzymes&#x2019; expression and distribution. Our data suggest that, despite the independent origins and distinct photosynthetic structures, leaves of Kranz-type C<sub>4</sub> species <italic>S. ferganica</italic> and SC-C<sub>4</sub> species <italic>S. aralocaspica</italic> experienced similar base-to-tip transitions to form a C<sub>4</sub> type in both structure and biochemistry. Such a phenomenon has been found in many different C<sub>4</sub> species studied so far, including Kranz type, Kranz-like type, or SC-C<sub>4</sub> species (<xref ref-type="bibr" rid="B34">Koteyeva et al., 2016</xref>). The representatives of Kranz-type C<sub>4</sub> species from Poaceae have been reported to have M and BS cells that are differentiated along longitudinal gradients of leaf veins, accompanying with accumulation of enzymes or mRNAs for the C<sub>4</sub> pathway (<xref ref-type="bibr" rid="B38">Langdale et al., 1988</xref>). In the C<sub>4</sub> grass <italic>A. hirta</italic> (Poaceae), however, PEPC and RUBPC accumulation along the base-to-tip developmental gradient of leaves is not associated with veins (<xref ref-type="bibr" rid="B71">Wakayama et al., 2003</xref>). Different types of Kranz anatomy of C<sub>4</sub> species in Chenopodiaceae (e.g. <italic>S. taxifolia</italic>, <italic>S. eltonica</italic>) and Cleomaceae (e.g. <italic>C. angustifolia</italic>) are differentiated basipetally and enhanced both in structure and biochemistry (<xref ref-type="bibr" rid="B31">Koteyeva et al., 2011a</xref>; <xref ref-type="bibr" rid="B33">Koteyeva et al., 2014</xref>). Besides developmental enhancement, in other C<sub>4</sub> species, e.g. <italic>S. aralocaspica</italic>, at early developmental stage (i.e. seed germination), light can induce the transition of identical structure of plastids in the incipient chlorenchyma of cotyledons to form dimorphic chloroplasts, synthesize C<sub>4</sub> enzymes, and generate structural and biochemical compartmentation, which ultimately leads to SC-C<sub>4</sub> syndrome (<xref ref-type="bibr" rid="B68">Voznesenskaya et al., 2003</xref>). Such developmental or inducible enhancement of photosynthetic structure and biochemistry suggests that complete structural differentiation, in coordination with other C<sub>4</sub> developmental processes, is essential for full C<sub>4</sub> functions (<xref ref-type="bibr" rid="B31">Koteyeva et al., 2011a</xref>), which should have important biological and ecological significance in evolutionary processes and be a smart strategy in adaptation to harsh habitats.</p>
<p>A common feature of developmental enhancement of C<sub>4</sub> syndrome is the differentiation of BS and M cells to form specialized functioning C<sub>4</sub> photosynthetic tissues (<xref ref-type="bibr" rid="B71">Wakayama et al., 2003</xref>), therefore, the leaves located at different positions of the shoot may present distinct structure and biochemistry. For studying the progressive development of the C<sub>4</sub> system, the leaf age (or size) and the distance to the leaf base are important (<xref ref-type="bibr" rid="B31">Koteyeva et al., 2011a</xref>). Leaf size less than 0.5&#x2013;0.7 cm is suitable for observation of photosynthetic enhancement, while in fully expanded leaf (2&#x2013;3 cm in <italic>S. taxifolia</italic>; 1.5&#x2013;2 cm in <italic>S. aralocaspica</italic>) such phenomenon is not apparently present or has nearly disappeared (<xref ref-type="bibr" rid="B31">Koteyeva et al., 2011a</xref>; <xref ref-type="bibr" rid="B34">Koteyeva et al., 2016</xref>). In the present study, in <italic>S</italic>. <italic>ferganica</italic>, cell differentiation in distinct lengths (or ages) of leaves (e.g. 0.2 cm, 0.5 cm, 1.0 cm) and different positions on the shoot was diverse, 0.2 or 0.5 cm of leaf presented an enhanced development pattern along the longitudinal gradient; the differentiation degree in 0.2 cm leaf was relatively lower, in which the M cells were arranged neatly and compactly, and the BS cells were smaller, however, with the size increasing, the leaf around 1 cm was fully differentiated, both M and BS cells were significantly expanded, and BS cells were arranged from discontinuous to continuous, M cells were significantly elongated. So the leaf age (or size) is an important indicator for determination of developmental progression (<xref ref-type="bibr" rid="B39">Lara et al., 2008</xref>; <xref ref-type="bibr" rid="B31">Koteyeva et al., 2011a</xref>).</p>
<p>It has been suggested that biochemical compartmentation (e.g. PEPC accumulation in M cells) may serve as a developmental signal for structural differentiation (<xref ref-type="bibr" rid="B15">Dengler et al., 1995</xref>): such changes on photosynthetic enzymes should be regulated by relevant gene expression (<xref ref-type="bibr" rid="B59">Sheen, 1999</xref>). In classical C<sub>4</sub> species (Kranz-anatomy), e.g. maize, corresponding to the progressive development of leaf structure, the majority of the photosynthetic genes are up-regulated in the tip of the leaf, which may be related to chloroplast differentiation or photosynthetic strategy (<xref ref-type="bibr" rid="B5">Cahoon et al., 2008</xref>). In SC-C<sub>4</sub> species of <italic>B. sinuspersici</italic>, with the progressive transition from C<sub>3</sub> mode to specialized functions of a C<sub>4</sub> system, various photosynthetic genes are up-regulated significantly corresponding to the developmental enhancement in structure and biochemistry from the bottom to tip of the leaf (<xref ref-type="bibr" rid="B39">Lara et al., 2008</xref>). In the present study, we found that the transcripts of <italic>RUBPC</italic>, <italic>PEPC</italic>, and <italic>PPDK</italic> in <italic>S. ferganica</italic> or <italic>S. aralocaspica</italic> were accumulated from the lower to upper part of plant or the bottom to tip section of a young leaf, which was well-matched with the progressive enhancement of photosynthetic structure and biochemistry. In addition, we distinguished the expression pattern between <italic>PEPC</italic>1 and <italic>PEPC</italic>2 in <italic>S. ferganica</italic> or <italic>S. aralocaspica</italic> (<xref ref-type="bibr" rid="B9">Cheng et al., 2016</xref>), compared to the increase of <italic>PEPC</italic>1, <italic>PEPC</italic>2 altered in a limited range with the developmental enhancement of the C<sub>4</sub> system. <italic>PEPC</italic>1 and <italic>PEPC</italic>2 encode two isoenzymes functioning in the phosphoenolpyruvate shuttle (<xref ref-type="bibr" rid="B45">O&#x2019;Leary et al., 2011</xref>). It has been reported that <italic>PEPC</italic>1 regulates the carbon flux and lipid accumulation in the cell (<xref ref-type="bibr" rid="B14">Deng et al., 2014</xref>), while <italic>PEPC</italic>2 negatively affects intracellular lipid accumulation in <italic>Chlamydomonas reinhardtii</italic> (<xref ref-type="bibr" rid="B13">Deng et al., 2011</xref>). Previous work in <italic>S. aralocaspica</italic> revealed that two types of <italic>PEPC</italic> exhibited different expression patterns in response to various stresses (<xref ref-type="bibr" rid="B9">Cheng et al., 2016</xref>). In tomato (<italic>Solanum lycopersicum</italic>) fruit development, both <italic>PEPC</italic>1 and <italic>PEPC</italic>2 are regulated; however, under salt stress, the latter is up-regulated while the former gives no response (<xref ref-type="bibr" rid="B78">Yin et al., 2010</xref>). PEPC (1/2) from endosperm of castor seed is involved in fatty acid synthesis and the following malate production in leucoplasts (<xref ref-type="bibr" rid="B3">Blonde, 2003</xref>). So far, few studies have specialized on analyses between <italic>PEPC</italic>1 and <italic>PEPC</italic>2 and their impact on gradient development of photosynthetic structure. In maize, the tip-base ratio of <italic>PEPC</italic>1 transcripts in leaf is 68 times (<xref ref-type="bibr" rid="B5">Cahoon et al., 2008</xref>). In SC-C<sub>4</sub> species of <italic>B. sinuspersici</italic>, a similar expression trend is observed (<xref ref-type="bibr" rid="B39">Lara et al., 2008</xref>). <italic>PEPC1</italic> and <italic>PEPC2</italic> perform different functions; however, which type contributes more in CO<sub>2</sub> fixation still needs further evidence to clarify this point. Taken together, our data support the positive correlation between photosynthetic gene expression pattern and structural and biochemical enhancement of C<sub>4</sub> syndrome in <italic>S. ferganica</italic> and <italic>S. aralocaspica</italic>.</p>
<p>The completion of the biochemical enhancement of C<sub>4</sub> photosynthesis has to rely on the translational expression of relevant genes. A basipetal developmental progression of protein accumulation has been revealed in SC-C<sub>4</sub> species of <italic>B.&#xa0;sinuspersici</italic> (<xref ref-type="bibr" rid="B39">Lara et al., 2008</xref>; <xref ref-type="bibr" rid="B34">Koteyeva et al., 2016</xref>), <italic>B.&#xa0;cycloptera</italic> (<xref ref-type="bibr" rid="B69">Voznesenskaya et al., 2005</xref>), and <italic>S. aralocaspica</italic> (<xref ref-type="bibr" rid="B68">Voznesenskaya et al., 2003</xref>; <xref ref-type="bibr" rid="B34">Koteyeva et al., 2016</xref>), in which Rubisco (rbcL) was accumulated earlier than other C<sub>4</sub> enzymes in very young leaves, followed by a great increase of both PEPC and RUBPC activity in mature leaves (<xref ref-type="bibr" rid="B33">Koteyeva et al., 2014</xref>). In the present study, a gradient development in cellular differentiation and biochemical enhancement (e.g. rising expression of C<sub>4</sub> photosynthetic enzymes) from the bottom to the tip of young leaves was also found in <italic>S. ferganica</italic> (Kranz anatomy). Analysis of the expression of proteins associated with C<sub>4</sub> photosynthesis in <italic>S. ferganica</italic> showed that the related enzymes were large accumulated with the leaf progressive development both in different layers of the plant and along the leaf longitudinal gradient, in which a substantial RUBPC was present at the bottom of intermediate leaf (IL, 0.5&#x2013;0.6 cm) during early development, meanwhile, a lag in the accumulation of C<sub>4</sub> enzymes also existed, especially the PPDK, which might be a rate-limiting step for the developing C<sub>4</sub> syndrome at an early stage (<xref ref-type="bibr" rid="B39">Lara et al., 2008</xref>; <xref ref-type="bibr" rid="B31">Koteyeva et al., 2011a</xref>; <xref ref-type="bibr" rid="B33">Koteyeva et al., 2014</xref>; <xref ref-type="bibr" rid="B34">Koteyeva et al., 2016</xref>). With the progression of structural differentiation and gene/protein expression, leaves located on different parts of the plant are driven to a more advanced developmental stage and proceed to a final mature C<sub>4</sub> syndrome (<xref ref-type="bibr" rid="B39">Lara et al., 2008</xref>; <xref ref-type="bibr" rid="B31">Koteyeva et al., 2011a</xref>; <xref ref-type="bibr" rid="B34">Koteyeva et al., 2016</xref>).</p>
</sec>
<sec id="s5" sec-type="conclusions">
<title>Conclusions</title>
<p>In the present study, we revealed the progressive development and enhancement of photosynthetic structure and biochemistry for C<sub>4</sub> syndrome in a Kranz-anatomy species <italic>S. ferganica</italic>. Compared to SC-C<sub>4</sub> species <italic>S. aralocaspica</italic> in our experiment<italic>, S. ferganica</italic> behaved as a non-typical C<sub>4</sub> species in photosynthetic physiology, e.g. flexible &#x3b4;<sup>13</sup>C value, lower PEPC activity, insensitive response to light intensity, etc. It is well-known that C<sub>4</sub> plants are evolved for adaptation to harsh habitats (<xref ref-type="bibr" rid="B62">Su et al., 2012</xref>). The C<sub>4</sub> assimilation pathway is a complicated system which has evolved across a long process and accumulated a variety of natural variations in anatomy and biochemistry related to the ancestral C<sub>3</sub> forms (<xref ref-type="bibr" rid="B55">Sage et al., 2012</xref>; <xref ref-type="bibr" rid="B23">Heckmann et al., 2013</xref>; <xref ref-type="bibr" rid="B10">Covshoff et al., 2014</xref>), it means that different C<sub>4</sub> types with different photosynthetic anatomy and physiology may survive diverse disasters in evolutionary processes. In the present study, on photosynthetic physiological characteristics, <italic>S. aralocaspica</italic> was stable while <italic>S.&#xa0;ferganica</italic> was more flexible in response to heterogeneous habitats: it has been suggested that the biochemical compartmentation in SC-C<sub>4</sub> species is more advanced organization mode (<xref ref-type="bibr" rid="B56">Sage, 2002</xref>; <xref ref-type="bibr" rid="B34">Koteyeva et al., 2016</xref>). All these changes and differences among C<sub>4</sub> species may represent different evolutionary steps for carbon assimilation pathways. Our findings revealed that both C<sub>4</sub> species in this study shared similar developmental enhancement in their C<sub>4</sub> system differentiation, and the completion of this system is essential for optimal practice of C<sub>4</sub> photosynthesis (<xref ref-type="bibr" rid="B68">Voznesenskaya et al., 2003</xref>). Our results should contribute to further understanding of the C<sub>4</sub> photosynthetic pathway in response to environmental variation. However, what the differences in photosynthetic physiology mean to C<sub>4</sub> system evolution between these two C<sub>4</sub> species needs more experimental evidence to elucidate.</p>
</sec>
<sec id="s6">
<title>Data Availability Statement</title>
<p>All datasets generated for this study are included in the article/<xref ref-type="supplementary-material" rid="SM1"><bold>Supplementary Material</bold></xref>.</p>
</sec>
<sec id="s7">
<title>Author Contributions</title>
<p>HL, YL, and TM designed the experiments and methodology. YL and HL wrote the manuscript. YL, TM, and JZ conducted the experiments and collected the data. YL, TM, JZ, and YM analyzed the data. All authors contributed critically to the manuscript and gave final approval for publication.</p>
</sec>
<sec id="s8" sec-type="funding-information">
<title>Funding</title>
<p>National Natural Science Foundation of China (31960037, 31660068); Open Funding of Key Laboratory of Xinjiang Uygur Autonomous Region (2016D03015).</p>
</sec>
<sec id="s9">
<title>Conflict of Interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
</body>
<back>
<ack>
<title>Acknowledgments</title>
<p>The authors thank the reviewers and all of the editors for their helpful comments and suggestions on this paper.</p>
</ack>
<sec sec-type="supplementary-material" id="s10">
<title>Supplementary Material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fpls.2020.00152/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fpls.2020.00152/full#supplementary-material</ext-link></p>
<supplementary-material xlink:href="Image_1.jpeg" id="SM1" mimetype="image/jpeg">
<label>Supplementary Figure 1</label>
<caption>
<p>Schematic diagram of location and position of cotyledon and true leaf of <italic>S. ferganica</italic> and <italic>S. aralocaspica</italic>. <bold>(A)</bold> <italic>S. ferganica</italic>; <bold>(B)</bold> <italic>S. aralocaspica</italic>. 0.5&#x2013;0.6: 0.5&#x2013;0.6 cm leaf; Upper: 1.3&#x2013;1.5 cm leaf in A, 1.8&#x2013;1.9 cm in B; Lower: 1.0 cm leaf in A, 2.0 cm in B. The image was taken from indoor plant. Scale bar is 1 cm.</p>
</caption>
</supplementary-material>
<supplementary-material xlink:href="Image_2.jpeg" id="SM2" mimetype="image/jpeg">
<label>Supplementary Figure 2</label>
<caption>
<p>The developmental stage and morphology of <italic>S. ferganica</italic> in natural habitats. <bold>(A)</bold> Early seedling with two cotyledons only; <bold>(B)</bold> Seedling developed with small leaves covered with white, thick, long, and soft trichomes; <bold>(C)</bold> Plant with many branches and leaves covered with white, thick, long, and soft trichomes; <bold>(D)</bold> Plant initiates blossom covered with much thinner and shorter trichomes on leaf; <bold>(E)</bold> Plant at full blossom stage.</p>
</caption>
</supplementary-material>
</sec>
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